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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107903467   aspartate carbamoyltransferase 1, chloroplastic 
 ghi-r.1   107932784   aspartate carbamoyltransferase 1, chloroplastic 
 ath-u.5   PYRB   PYRIMIDINE B 
 bra-r.6   103869333   aspartate carbamoyltransferase, chloroplastic 
 bna-r.1   106357502   aspartate carbamoyltransferase, chloroplastic-like 
 bna-r.1   106432342   aspartate carbamoyltransferase, chloroplastic 
 bna-r.1   111203208   aspartate carbamoyltransferase, chloroplastic-like 
 cit-r.1   102625657   aspartate carbamoyltransferase 2, chloroplastic 
 gma-u.5   100815285   aspartate carbamoyltransferase 2, chloroplastic-like 
 gma-u.5   100802354   aspartate carbamoyltransferase 1, chloroplastic 
 gma-u.5   100796746   aspartate carbamoyltransferase 2, chloroplastic 
 vvi-u.5   100246977   aspartate carbamoyltransferase, chloroplastic 
 ppo-u.5   7478712   aspartate carbamoyltransferase 1, chloroplastic 
 mtr-u.5   11437903   aspartate carbamoyltransferase 3, chloroplastic 
 mtr-u.5   11426800   aspartate carbamoyltransferase 1, chloroplastic 
 sly-u.5   pyrB   aspartate carbamoyltransferase 
 sot-r.1   102596994   aspartate carbamoyltransferase, chloroplastic 
 nta-r.1   107815103   aspartate carbamoyltransferase, chloroplastic 
 nta-r.1   107805660   aspartate carbamoyltransferase, chloroplastic 
 osa-u.5   4345071   aspartate carbamoyltransferase, chloroplastic-like 
 zma-u.5   100282482   aspartate carbamoyltransferase 1 
 zma-u.5   100282373   uncharacterized LOC100282373 
 zma-u.5   100279008   uncharacterized LOC100279008 
 tae-r.2   123120027   aspartate carbamoyltransferase, chloroplastic 
 tae-r.2   123111087   aspartate carbamoyltransferase, chloroplastic 
 tae-r.2   123102911   aspartate carbamoyltransferase, chloroplastic 
 hvu-r.1   123426378   aspartate carbamoyltransferase, chloroplastic 
 sbi-r.1   110436769   aspartate carbamoyltransferase, chloroplastic 
 bdi-r.1   100827799   aspartate carbamoyltransferase, chloroplastic 
 cre-r.1   CHLRE_02g079700v5   uncharacterized protein 

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Top 50 coexpressed genes to 107903467 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107903467 (ghi-r.1 coexpression data)

CoexMap"107903467"


ghiLOC107903467 | Entrez gene ID : 107903467    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 3 1 1 2 1 1 2 1 3 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00240 [list] [network] Pyrimidine metabolism (157 genes)
ghi00250 [list] [network] Alanine, aspartate and glutamate metabolism (131 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO:0006207 [list] [network] 'de novo' pyrimidine nucleobase biosynthetic process  (20 genes)  IEA  
GO:0006520 [list] [network] amino acid metabolic process  (883 genes)  IEA  
GO CC
GO MF
GO:0004070 [list] [network] aspartate carbamoyltransferase activity  (2 genes)  IEA  
GO:0016597 [list] [network] amino acid binding  (31 genes)  IEA  
Protein XP_016685011.1 [sequence] [blastp]
XP_016685012.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  mito 1  (predict for XP_016685011.1)
chlo 6,  cyto 1,  mito 1  (predict for XP_016685012.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_016685011.1)
chlo 7,  other 4  (predict for XP_016685012.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107903467
ghi-r.1
for
107932784
ath-u.5
for
PYRB
bra-r.6
for
103869333
bna-r.1
for
106357502
bna-r.1
for
106432342
bna-r.1
for
111203208
cit-r.1
for
102625657
gma-u.5
for
100815285
gma-u.5
for
100802354
gma-u.5
for
100796746
vvi-u.5
for
100246977
ppo-u.5
for
7478712
mtr-u.5
for
11437903
mtr-u.5
for
11426800
sly-u.5
for
pyrB
sot-r.1
for
102596994
nta-r.1
for
107815103
nta-r.1
for
107805660
osa-u.5
for
4345071
zma-u.5
for
100282482
zma-u.5
for
100282373
zma-u.5
for
100279008
tae-r.2
for
123120027
tae-r.2
for
123111087
tae-r.2
for
123102911
hvu-r.1
for
123426378
sbi-r.1
for
110436769
bdi-r.1
for
100827799
cre-r.1
for
CHLRE_02g079700v5


Ortholog ID: 7224
Species ghi ghi ath bra bna bna bna cit gma gma gma vvi ppo mtr mtr sly sot nta nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107903467 LOC107932784 PYRB LOC103869333 LOC106357502 LOC106432342 LOC111203208 LOC102625657 LOC100802354 LOC100796746 LOC100787097 LOC100246977 LOC7478712 LOC11437903 LOC11426800 pyrB LOC102596994 LOC107815103 LOC107805660 LOC4345071 LOC100282482 LOC100282373 LOC100279008 LOC123120027 LOC123111087 LOC123102911 LOC123426378 LOC110436769 LOC100827799 CHLRE_02g079700v5
Function* aspartate carbamoyltransferase 1, chloroplastic aspartate carbamoyltransferase 1, chloroplastic PYRIMIDINE B aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic-like aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic-like aspartate carbamoyltransferase 2, chloroplastic aspartate carbamoyltransferase 1, chloroplastic aspartate carbamoyltransferase 2, chloroplastic aspartate carbamoyltransferase 1, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase 1, chloroplastic aspartate carbamoyltransferase 3, chloroplastic aspartate carbamoyltransferase 1, chloroplastic aspartate carbamoyltransferase aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic-like aspartate carbamoyltransferase 1 uncharacterized LOC100282373 uncharacterized LOC100279008 aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic aspartate carbamoyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00250 Alanine, aspartate and glutamate metabolism 3
ath01240 Biosynthesis of cofactors 3
ath03020 RNA polymerase 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00250 Alanine, aspartate and glutamate metabolism 6
bra01240 Biosynthesis of cofactors 6
bra00230 Purine metabolism 5
bra01232 Nucleotide metabolism 3
bra00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 10
bna01240 Biosynthesis of cofactors 10
bna00230 Purine metabolism 7
bna01232 Nucleotide metabolism 7
bna00300 Lysine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 10
bna01240 Biosynthesis of cofactors 10
bna00230 Purine metabolism 7
bna01232 Nucleotide metabolism 7
bna00300 Lysine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 7
bna01240 Biosynthesis of cofactors 7
bna00230 Purine metabolism 4
bna01232 Nucleotide metabolism 4
bna00300 Lysine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03018 RNA degradation 3
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma04145 Phagosome 4
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 8
gma00250 Alanine, aspartate and glutamate metabolism 3
gma00240 Pyrimidine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 4
nta01240 Biosynthesis of cofactors 4
nta00260 Glycine, serine and threonine metabolism 4
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00250 Alanine, aspartate and glutamate metabolism 4
nta01230 Biosynthesis of amino acids 3
nta01240 Biosynthesis of cofactors 3
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00240 Pyrimidine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00240 Pyrimidine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01240 Biosynthesis of cofactors 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00240 Pyrimidine metabolism 3
tae00230 Purine metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 6
tae01240 Biosynthesis of cofactors 6
tae01230 Biosynthesis of amino acids 4
tae00240 Pyrimidine metabolism 3
tae00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 6
tae01240 Biosynthesis of cofactors 6
tae01230 Biosynthesis of amino acids 6
tae00240 Pyrimidine metabolism 3
tae00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00480 Glutathione metabolism 2
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi00250 Alanine, aspartate and glutamate metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 3
bdi00230 Purine metabolism 3
bdi01240 Biosynthesis of cofactors 2
bdi00670 One carbon pool by folate 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107903467 107932784 821577 103869333 106357502 106432342 111203208 102625657 100802354 100796746 100787097 100246977 7478712 11437903 11426800 544088 102596994 107815103 107805660 4345071 100282482 100282373 100279008 123120027 123111087 123102911 123426378 110436769 100827799 5727278
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