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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107905701   farnesyl pyrophosphate synthase 1 
 ath-u.5   FPS2   farnesyl diphosphate synthase 2 
 ath-u.5   FPS1   farnesyl diphosphate synthase 1 
 gma-u.5   100782137   farnesyl pyrophosphate synthase 1-like 
 gma-u.5   100802347   farnesyl pyrophosphate synthase 1 
 vvi-u.5   100232975   farnesyl diphosphate synthase 
 ppo-u.5   7458466   farnesyl pyrophosphate synthase 1 
 mtr-u.5   11410760   farnesyl pyrophosphate synthase 1 
 sly-u.5   FPPS1   farnesyl pyrophosphate synthase 
 sly-u.5   FPPS2   farnesyl pyrophosphate synthase 
 osa-u.5   4337261   farnesyl pyrophosphate synthase 
 osa-u.5   4339489   farnesyl pyrophosphate synthase 
 osa-u.5   4323892   farnesyl pyrophosphate synthase 
 zma-u.5   541903   farnesyl pyrophosphate synthase 1 
 zma-u.5   100273420   farnesyl diphosphate synthase3 
 zma-u.5   100192004   uncharacterized LOC100192004 

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Top 50 coexpressed genes to 107905701 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107905701 (ghi-r.1 coexpression data)

CoexMap"107905701"


ghiLOC107905701 | Entrez gene ID : 107905701    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 2 1 1 1 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00900 [list] [network] Terpenoid backbone biosynthesis (143 genes)
GO BP
GO:0045337 [list] [network] farnesyl diphosphate biosynthetic process  (15 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004161 [list] [network] dimethylallyltranstransferase activity  (4 genes)  IEA  
GO:0004337 [list] [network] (2E,6E)-farnesyl diphosphate synthase activity  (4 genes)  IEA  
Protein XP_016687894.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for XP_016687894.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016687894.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107905701
ath-u.5
for
FPS2
ath-u.5
for
FPS1
gma-u.5
for
100782137
gma-u.5
for
100802347
vvi-u.5
for
100232975
ppo-u.5
for
7458466
mtr-u.5
for
11410760
sly-u.5
for
FPPS1
sly-u.5
for
FPPS2
osa-u.5
for
4337261
osa-u.5
for
4339489
osa-u.5
for
4323892
zma-u.5
for
541903
zma-u.5
for
100273420
zma-u.5
for
100192004


Ortholog ID: 2661
Species ghi ghi ath ath bra bna bna cit gma gma vvi ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi bdi bdi cre
Symbol LOC107905701 LOC107944620 FPS1 FPS2 LOC103827619 LOC106406977 LOC106454354 LOC102615408 LOC100802347 LOC100782137 LOC100232975 LOC7458466 LOC11410760 FPPS1 FPPS2 LOC102605652 LOC102599350 LOC107765018 LOC142161714 LOC4339489 LOC4323892 LOC100192004 LOC100273420 LOC123054852 LOC101867527 LOC123447964 LOC8061092 LOC100844842 LOC100846401 CHLRE_03g207700v5
Function* farnesyl pyrophosphate synthase 1 farnesyl pyrophosphate synthase farnesyl diphosphate synthase 1 farnesyl diphosphate synthase 2 farnesyl pyrophosphate synthase 2 farnesyl pyrophosphate synthase 1, mitochondrial farnesyl pyrophosphate synthase 2 farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase 1 farnesyl pyrophosphate synthase 1-like farnesyl diphosphate synthase farnesyl pyrophosphate synthase 1 farnesyl pyrophosphate synthase 1 farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase 1-like farnesyl pyrophosphate synthase 1-like farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase-like farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase uncharacterized LOC100192004 farnesyl diphosphate synthase3 farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase farnesyl pyrophosphate synthase 1 farnesyl pyrophosphate synthase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 12
ghi00071 Fatty acid degradation 2
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00310 Lysine degradation 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 6
ath00100 Steroid biosynthesis 5
ath04145 Phagosome 4
ath04517 IgSF CAM signaling 4
ath04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00100 Steroid biosynthesis 5
ath00020 Citrate cycle (TCA cycle) 3
ath00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 3
cit00030 Pentose phosphate pathway 2
cit00480 Glutathione metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 11
gma00280 Valine, leucine and isoleucine degradation 4
gma00650 Butanoate metabolism 3
gma00071 Fatty acid degradation 2
gma01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 13
gma00280 Valine, leucine and isoleucine degradation 4
gma00650 Butanoate metabolism 4
gma00071 Fatty acid degradation 3
gma01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00071 Fatty acid degradation 2
vvi01212 Fatty acid metabolism 2
vvi01240 Biosynthesis of cofactors 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
ppo04144 Endocytosis 2
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 7
mtr00020 Citrate cycle (TCA cycle) 2
mtr00280 Valine, leucine and isoleucine degradation 2
mtr00650 Butanoate metabolism 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 7
sly01200 Carbon metabolism 3
sly00020 Citrate cycle (TCA cycle) 3
sly00280 Valine, leucine and isoleucine degradation 2
sly00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 4
sly01200 Carbon metabolism 4
sly01240 Biosynthesis of cofactors 3
sly00640 Propanoate metabolism 3
sly00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 2
sot00260 Glycine, serine and threonine metabolism 2
sot00470 D-Amino acid metabolism 2
sot00900 Terpenoid backbone biosynthesis 2
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 8
sot00020 Citrate cycle (TCA cycle) 5
sot00280 Valine, leucine and isoleucine degradation 4
sot00650 Butanoate metabolism 4
sot01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 6
nta00020 Citrate cycle (TCA cycle) 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 8
nta00020 Citrate cycle (TCA cycle) 6
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01212 Fatty acid metabolism 5
osa01200 Carbon metabolism 4
osa00061 Fatty acid biosynthesis 4
osa01240 Biosynthesis of cofactors 4
osa00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00900 Terpenoid backbone biosynthesis 6
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00500 Starch and sucrose metabolism 3
tae03015 mRNA surveillance pathway 3
tae04136 Autophagy - other 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 3
hvu00071 Fatty acid degradation 2
hvu00592 alpha-Linolenic acid metabolism 2
hvu01212 Fatty acid metabolism 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00900 Terpenoid backbone biosynthesis 2
sbi00240 Pyrimidine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi00710 Carbon fixation by Calvin cycle 5
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107905701 107944620 834828 827430 103827619 106406977 106454354 102615408 100802347 100782137 100232975 7458466 11410760 543552 101259377 102605652 102599350 107765018 142161714 4339489 4323892 100192004 100273420 123054852 101867527 123447964 8061092 100844842 100846401 5718819
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