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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906459   transcription factor IIIA 
 ath-u.5   TFIIIA   transcription factor IIIA 
 gma-u.5   100801812   transcription factor IIIA 
 gma-u.5   100800196   transcription factor IIIA 
 vvi-u.5   100260239   transcription factor IIIA 
 ppo-u.5   7475788   transcription factor IIIA 
 ppo-u.5   18104416   transcription factor IIIA 
 mtr-u.5   120580533   transcription factor IIIA 
 mtr-u.5   120580532   transcription factor IIIA 
 sly-u.5   TFIIIA   transcription factor IIIA 
 osa-u.5   4337652   transcription factor IIIA 
 zma-u.5   100216772   uncharacterized LOC100216772 
 zma-u.5   100383605   Transcription factor IIIA 

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Top 50 coexpressed genes to 107906459 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906459 (ghi-r.1 coexpression data)

CoexMap"107906459"


ghiLOC107906459 | Entrez gene ID : 107906459    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0080084 [list] [network] 5S rDNA binding  (6 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016688940.1 [sequence] [blastp]
XP_016688942.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016688940.1)
nucl 10  (predict for XP_016688942.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016688940.1)
mito 7,  other 5  (predict for XP_016688942.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906459
ath-u.5
for
TFIIIA
gma-u.5
for
100801812
gma-u.5
for
100800196
vvi-u.5
for
100260239
ppo-u.5
for
7475788
ppo-u.5
for
18104416
mtr-u.5
for
120580533
mtr-u.5
for
120580532
sly-u.5
for
TFIIIA
osa-u.5
for
4337652
zma-u.5
for
100216772
zma-u.5
for
100383605


Ortholog ID: 5220
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae hvu hvu sbi bdi bdi
Symbol LOC107943963 LOC107904894 TFIIIA LOC103830815 LOC103852749 LOC106353758 LOC106395808 LOC102610702 LOC100801812 LOC100800196 LOC100260239 LOC7475788 LOC18104416 LOC120580532 TFIIIA LOC102603483 LOC107777976 LOC107759063 LOC4337652 LOC100383605 LOC100216772 LOC123143194 LOC123131751 LOC123398959 LOC123401189 LOC8068150 LOC100845584 LOC100827085
Function* transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA transcription factor IIIA zinc finger protein 16 transcription factor IIIA-like transcription factor IIIA transcription factor IIIA Transcription factor IIIA uncharacterized LOC100216772 transcription factor IIIA transcription factor IIIA transcription factor IIIA-like transcription factor IIIA-like transcription factor IIIA transcription factor IIIA transcription factor IIIA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107943963 107904894 843536 103830815 103852749 106353758 106395808 102610702 100801812 100800196 100260239 7475788 18104416 120580532 100037495 102603483 107777976 107759063 4337652 100383605 100216772 123143194 123131751 123398959 123401189 8068150 100845584 100827085
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