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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107907481   4-coumarate--CoA ligase 2 
 ath-u.5   4CL3   4-coumarate:CoA ligase 3 
 ath-u.5   4CL2   4-coumarate:CoA ligase 2 
 ath-u.5   4CL1   4-coumarate:CoA ligase 1 
 gma-u.5   100810418   4-coumarate--CoA ligase 1 
 gma-u.5   100779668   4-coumarate--CoA ligase 2 
 vvi-u.5   4CL   4-coumarate:CoA ligase 
 vvi-u.5   100254698   4-coumarate--CoA ligase 2 
 ppo-u.5   7488981   4-coumarate--CoA ligase 2 
 ppo-u.5   7469843   4-coumarate--CoA ligase 2 
 ppo-u.5   7462820   4-coumarate--CoA ligase 1 
 mtr-u.5   11429318   4-coumarate--CoA ligase 1 
 mtr-u.5   11426040   4-coumarate--CoA ligase 2 
 mtr-u.5   25488009   4-coumarate--CoA ligase 1 
 sly-u.5   101251197   4-coumarate--CoA ligase 
 sly-u.5   4CL   4-coumarate--CoA ligase 
 sly-u.5   101248210   4-coumarate--CoA ligase 
 osa-u.5   4345717   probable 4-coumarate--CoA ligase 5 
 osa-u.5   4328485   probable 4-coumarate--CoA ligase 3 
 osa-u.5   4330407   probable 4-coumarate--CoA ligase 2 
 zma-u.5   542166   4-coumarate--CoA ligase 1 
 zma-u.5   103653944   probable 4-coumarate--CoA ligase 2 
 zma-u.5   100382272   uncharacterized LOC100382272 

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Top 50 coexpressed genes to 107907481 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107907481 (ghi-r.1 coexpression data)

CoexMap"107907481"


ghiLOC107907481 | Entrez gene ID : 107907481    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 3 2 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (102 genes)
ghi00940 [list] [network] Phenylpropanoid biosynthesis (349 genes)
GO BP
GO CC
GO MF
GO:0016405 [list] [network] CoA-ligase activity  (67 genes)  IEA  
Protein XP_016690366.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  cyto 1,  plas 1,  E.R. 1,  chlo_mito 1,  E.R._plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016690366.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016690366.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107907481

.
ath-u.5
for
4CL3

.
ath-u.5
for
4CL2

.
ath-u.5
for
4CL1

.
gma-u.5
for
100810418

.
gma-u.5
for
100779668

.
vvi-u.5
for
4CL

.
vvi-u.5
for
100254698

.
ppo-u.5
for
7488981

.
ppo-u.5
for
7469843

.
ppo-u.5
for
7462820

.
mtr-u.5
for
11429318

.
mtr-u.5
for
11426040

.
mtr-u.5
for
25488009

.
sly-u.5
for
101251197

.
sly-u.5
for
4CL

.
sly-u.5
for
101248210

.
osa-u.5
for
4345717

.
osa-u.5
for
4328485

.
osa-u.5
for
4330407

.
zma-u.5
for
542166

.
zma-u.5
for
103653944

.
zma-u.5
for
100382272

.


Ortholog ID: 904
Species ath ath gma gma sly sly osa osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol 4CL3 4CL1 4CL4 4CL2 LOC101251363 4CL LOC4328485 LOC4345717 LOC103653944 LOC100382272 LOC103831048 4CL LOC7469843 LOC18100511 LOC25488009 LOC11429318 LOC123169286 LOC123128073 LOC123425062 LOC123402081 LOC107958337 LOC107913823 LOC125575200 LOC125609511 LOC8079391 LOC8077870 LOC102584603 LOC102589212 LOC102629456 LOC102623419 LOC100826883 LOC100842528 LOC107797004 LOC107803673
Function* 4-coumarate:CoA ligase 3 4-coumarate:CoA ligase 1 4-coumarate--CoA ligase 4 4-coumarate--CoA ligase 2 4-coumarate--CoA ligase 4-coumarate--CoA ligase probable 4-coumarate--CoA ligase 3 probable 4-coumarate--CoA ligase 5 probable 4-coumarate--CoA ligase 2 uncharacterized LOC100382272 4-coumarate--CoA ligase 3 4-coumarate:CoA ligase 4-coumarate--CoA ligase 2 4-coumarate--CoA ligase CCL1 4-coumarate--CoA ligase 1 4-coumarate--CoA ligase 1 4-coumarate--CoA ligase 4 4-coumarate--CoA ligase 2 4-coumarate--CoA ligase 5 4-coumarate--CoA ligase 3 4-coumarate--CoA ligase 2 4-coumarate:CoA ligase 1 4-coumarate--CoA ligase 1-like 4-coumarate--CoA ligase 1 probable 4-coumarate--CoA ligase 3 probable 4-coumarate--CoA ligase 5 4-coumarate--CoA ligase 2 4-coumarate--CoA ligase 2-like 4-coumarate--CoA ligase CCL1-like 4-coumarate--CoA ligase 1-like probable 4-coumarate--CoA ligase 1 probable 4-coumarate--CoA ligase 4 4-coumarate--CoA ligase 2 4-coumarate--CoA ligase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 5
ath00944 Flavone and flavonol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 14
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 6
gma00941 Flavonoid biosynthesis 4
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
gma00360 Phenylalanine metabolism 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 14
gma00941 Flavonoid biosynthesis 5
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 7
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 7
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
sly01230 Biosynthesis of amino acids 5
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
sly00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 8
osa01230 Biosynthesis of amino acids 4
osa00670 One carbon pool by folate 4
osa00360 Phenylalanine metabolism 3
osa00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 10
osa00360 Phenylalanine metabolism 5
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 3
zma00620 Pyruvate metabolism 3
zma00460 Cyanoamino acid metabolism 2
zma00940 Phenylpropanoid biosynthesis 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00941 Flavonoid biosynthesis 7
bra00940 Phenylpropanoid biosynthesis 4
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 6
vvi00940 Phenylpropanoid biosynthesis 5
vvi04712 Circadian rhythm - plant 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00941 Flavonoid biosynthesis 7
ppo04712 Circadian rhythm - plant 3
ppo01212 Fatty acid metabolism 3
ppo00940 Phenylpropanoid biosynthesis 2
ppo00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 9
mtr00941 Flavonoid biosynthesis 4
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 13
mtr00360 Phenylalanine metabolism 4
mtr00941 Flavonoid biosynthesis 4
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04626 Plant-pathogen interaction 3
tae02010 ABC transporters 3
tae04981 Folate transport and metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01040 Biosynthesis of unsaturated fatty acids 6
tae01212 Fatty acid metabolism 6
tae00941 Flavonoid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 5
hvu01230 Biosynthesis of amino acids 2
hvu00941 Flavonoid biosynthesis 2
hvu00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 17
ghi00941 Flavonoid biosynthesis 8
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 8
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 15
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00941 Flavonoid biosynthesis 4
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ghi00380 Tryptophan metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 6
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 6
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 8
sbi01230 Biosynthesis of amino acids 4
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 6
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
sbi01230 Biosynthesis of amino acids 2
sbi00941 Flavonoid biosynthesis 2
sbi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 11
sot00941 Flavonoid biosynthesis 7
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 7
sot01230 Biosynthesis of amino acids 4
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 11
cit00360 Phenylalanine metabolism 3
cit00941 Flavonoid biosynthesis 3
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 14
bdi00360 Phenylalanine metabolism 7
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 7
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 14
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 7
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842814 841593 547930 547944 101251363 101249624 4328485 4345717 103653944 100382272 103831048 100245991 7469843 18100511 25488009 11429318 123169286 123128073 123425062 123402081 107958337 107913823 125575200 125609511 8079391 8077870 102584603 102589212 102629456 102623419 100826883 100842528 107797004 107803673
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