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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909434   floral homeotic protein PMADS 1-like 
 ath-u.5   AP3   K-box region and MADS-box transcription factor family protein 
 gma-u.5   100784496   floral homeotic protein DEFICIENS-like 
 gma-u.5   100809514   agamous-like MADS-box protein AP3 
 gma-u.5   NMH7   MADS-box protein NMH7 
 vvi-u.5   AP3   flowering-related B-class MADS-box protein APETALA3 
 vvi-u.5   TM6   flowering-related B-class MADS-box protein 
 ppo-u.5   18101228   agamous-like MADS-box protein TM6 
 mtr-u.5   11426468   agamous-like MADS-box protein TM6 
 mtr-u.5   11433683   agamous-like MADS-box protein AP3 
 sly-u.5   TDR6   TDR6 transcription factor 
 sly-u.5   DEF   floral homeotic protein DEFICIENS 
 osa-u.5   4342047   MADS-box transcription factor 16-like 
 zma-u.5   541799   silky 1 

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Top 50 coexpressed genes to 107909434 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909434 (ghi-r.1 coexpression data)

CoexMap"107909434"


ghiLOC107909434 | Entrez gene ID : 107909434    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 3 2 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein NP_001313945.1 [sequence] [blastp]
XP_016692429.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001313945.1)
nucl 10  (predict for XP_016692429.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001313945.1)
other 8  (predict for XP_016692429.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909434
ath-u.5
for
AP3
gma-u.5
for
100784496
gma-u.5
for
100809514
gma-u.5
for
NMH7
vvi-u.5
for
AP3
vvi-u.5
for
TM6
ppo-u.5
for
18101228
mtr-u.5
for
11426468
mtr-u.5
for
11433683
sly-u.5
for
TDR6
sly-u.5
for
DEF
osa-u.5
for
4342047
zma-u.5
for
541799


Ortholog ID: 3591
Species ghi ghi ath bra bna bna cit cit gma gma vvi vvi mtr mtr sly sly sot nta nta osa zma tae
Symbol LOC107936526 LOC107927061 AP3 LOC103841349 LOC106449291 LOC106431373 LOC102609278 LOC102627791 LOC100809514 LOC100784496 TM6 AP3 LOC11426468 LOC11433683 DEF TDR6 LOC102601659 LOC142179077 LOC107802634 LOC4342047 LOC541799 LOC123157564
Function* agamous-like MADS-box protein TM6 floral homeotic protein PMADS 1-like K-box region and MADS-box transcription factor family protein floral homeotic protein APETALA 3 floral homeotic protein APETALA 3-like floral homeotic protein APETALA 3-like agamous-like MADS-box protein AP3 agamous-like MADS-box protein TM6 agamous-like MADS-box protein AP3 floral homeotic protein DEFICIENS-like flowering-related B-class MADS-box protein flowering-related B-class MADS-box protein APETALA3 agamous-like MADS-box protein TM6 agamous-like MADS-box protein AP3 floral homeotic protein DEFICIENS TDR6 transcription factor floral homeotic protein DEFICIENS-like floral homeotic protein PMADS 1 floral homeotic protein PMADS 1 MADS-box transcription factor 16-like silky 1 MADS-box transcription factor 16
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 2
tae00904 Diterpenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107936526 107927061 824601 103841349 106449291 106431373 102609278 102627791 100809514 100784496 100233014 100233029 11426468 11433683 778307 544255 102601659 142179077 107802634 4342047 541799 123157564
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