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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107910417   ribosome maturation protein SBDS 
 ghi-r.1   107952028   ribosome maturation protein SBDS 
 ath-u.5   AT1G43860   sequence-specific DNA binding transcription factor 
 bra-r.6   103868737   ribosome maturation protein SBDS 
 bra-r.6   103847709   ribosome maturation protein SBDS 
 bna-r.1   106415144   uncharacterized LOC106415144 
 bna-r.1   106410444   ribosome maturation protein SBDS 
 bna-r.1   106400803   ribosome maturation protein SBDS 
 cit-r.1   102611954   uncharacterized LOC102611954 
 gma-u.5   100797497   ribosome maturation protein SBDS 
 gma-u.5   100776352   ribosome maturation protein SBDS-like 
 vvi-u.5   100259091   uncharacterized LOC100259091 
 ppo-u.5   7466425   uncharacterized LOC7466425 
 ppo-u.5   7492443   uncharacterized LOC7492443 
 mtr-u.5   25496888   ribosome maturation protein SBDS 
 sly-u.5   101258649   uncharacterized LOC101258649 
 sot-r.1   102600952   ribosome maturation protein SBDS 
 nta-r.1   107765448   uncharacterized LOC107765448 
 nta-r.1   107821704   uncharacterized LOC107821704 
 osa-u.5   4344458   uncharacterized LOC4344458 
 zma-u.5   100282435   uncharacterized 100282435 
 tae-r.2   123054319   ribosome maturation protein SBDS 
 tae-r.2   123046471   ribosome maturation protein SBDS 
 tae-r.2   123190206   ribosome maturation protein SBDS 
 hvu-r.1   123427633   ribosome maturation protein SBDS 
 sbi-r.1   8068519   ribosome maturation protein SBDS 
 bdi-r.1   100834982   ribosome maturation protein SBDS 
 cre-r.1   CHLRE_01g017500v5   uncharacterized protein 

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Top 50 coexpressed genes to 107910417 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107910417 (ghi-r.1 coexpression data)

CoexMap"107910417"


ghiLOC107910417 | Entrez gene ID : 107910417    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 3 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03008 [list] [network] Ribosome biogenesis in eukaryotes (1571 genes)
GO BP
GO:0042256 [list] [network] cytosolic ribosome assembly  (10 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (752 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016693736.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  cyto_mito 1  (predict for XP_016693736.2)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_016693736.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107910417
ghi-r.1
for
107952028
ath-u.5
for
AT1G43860
bra-r.6
for
103868737
bra-r.6
for
103847709
bna-r.1
for
106415144
bna-r.1
for
106410444
bna-r.1
for
106400803
cit-r.1
for
102611954
gma-u.5
for
100797497
gma-u.5
for
100776352
vvi-u.5
for
100259091
ppo-u.5
for
7466425
ppo-u.5
for
7492443
mtr-u.5
for
25496888
sly-u.5
for
101258649
sot-r.1
for
102600952
nta-r.1
for
107765448
nta-r.1
for
107821704
osa-u.5
for
4344458
zma-u.5
for
100282435
tae-r.2
for
123054319
tae-r.2
for
123046471
tae-r.2
for
123190206
hvu-r.1
for
123427633
sbi-r.1
for
8068519
bdi-r.1
for
100834982
cre-r.1
for
CHLRE_01g017500v5


Ortholog ID: 8277
Species ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107910417 LOC107952028 AT1G43860 LOC103868737 LOC103847709 LOC106415144 LOC106400803 LOC125601646 LOC102611954 LOC100797497 LOC100776352 LOC100259091 LOC7466425 LOC7492443 LOC25496888 LOC101258649 LOC102600952 LOC107765448 LOC107821704 LOC4344458 LOC100282435 LOC123054319 LOC123046471 LOC123190206 LOC123427633 LOC8068519 LOC100834982 CHLRE_01g017500v5
Function* ribosome maturation protein SBDS ribosome maturation protein SBDS sequence-specific DNA binding transcription factor ribosome maturation protein SBDS ribosome maturation protein SBDS uncharacterized LOC106415144 ribosome maturation protein SBDS ribosome maturation protein SBDS-like uncharacterized LOC102611954 ribosome maturation protein SBDS ribosome maturation protein SBDS-like uncharacterized LOC100259091 uncharacterized LOC7466425 uncharacterized LOC7492443 ribosome maturation protein SBDS uncharacterized LOC101258649 ribosome maturation protein SBDS uncharacterized LOC107765448 uncharacterized LOC107821704 uncharacterized LOC4344458 uncharacterized 100282435 ribosome maturation protein SBDS ribosome maturation protein SBDS ribosome maturation protein SBDS ribosome maturation protein SBDS ribosome maturation protein SBDS ribosome maturation protein SBDS uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03013 Nucleocytoplasmic transport 2
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03013 Nucleocytoplasmic transport 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr03040 Spliceosome 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 3
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 6
sbi04626 Plant-pathogen interaction 3
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 2
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107910417 107952028 840982 103868737 103847709 106415144 106400803 125601646 102611954 100797497 100776352 100259091 7466425 7492443 25496888 101258649 102600952 107765448 107821704 4344458 100282435 123054319 123046471 123190206 123427633 8068519 100834982 5715144
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