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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107912781   histone deacetylase HDT1 
 ghi-r.1   107891646   histone deacetylase HDT1 
 ghi-r.1   107905356   histone deacetylase HDT3 
 ghi-r.1   107906652   histone deacetylase HDT1 
 ath-u.5   HD2C   histone deacetylase 2C 
 ath-u.5   HDA3   histone deacetylase 3 
 ath-u.5   HD2B   histone deacetylase 2B 
 bra-r.6   103856522   histone deacetylase HDT2 
 bra-r.6   103851458   histone deacetylase HDT2 
 bna-r.1   125583208   histone deacetylase HDT2-like 
 bna-r.1   106427797   histone deacetylase HDT2 
 cit-r.1   102618548   histone deacetylase HDT1-like 
 cit-r.1   102615049   histone deacetylase HDT1 
 gma-u.5   HDT2   histone deacetylase HDT1-like 
 gma-u.5   HDT4   histone deacetylase HDT1-like 
 gma-u.5   100792094   uncharacterized LOC100792094 
 vvi-u.5   100256817   histone deacetylase HDT1 
 vvi-u.5   100252840   histone deacetylase HDT1 
 ppo-u.5   7474933   histone deacetylase HDT1 
 ppo-u.5   18100075   histone deacetylase HDT1 
 ppo-u.5   18097993   histone deacetylase HDT1 
 mtr-u.5   11434112   histone deacetylase HDT1 
 mtr-u.5   11434564   histone deacetylase HDT1 
 mtr-u.5   112416804   histone deacetylase HDT1 
 sly-u.5   101244607   histone deacetylase HDT1 
 sly-u.5   101262270   histone deacetylase HDT1 
 sot-r.1   102595265   histone deacetylase HDT1 
 sot-r.1   102595604   histone deacetylase HDT1 
 nta-r.1   107776644   histone deacetylase HDT1-like 
 nta-r.1   107782996   histone deacetylase HDT1-like 
 nta-r.1   107792079   histone deacetylase HDT1-like 
 osa-u.5   4339823   histone deacetylase HDT2 
 zma-u.5   103636373   histone deacetylase HDT3-like 
 zma-u.5   103636374   histone deacetylase HDT1-like 
 zma-u.5   103636709   histone deacetylase HDT1-like 
 tae-r.2   123050863   histone deacetylase HDT2 
 tae-r.2   123071217   histone deacetylase HDT2 
 tae-r.2   123183440   histone deacetylase HDT2 
 hvu-r.1   123452961   histone deacetylase HDT2-like 
 sbi-r.1   8066575   histone deacetylase HDT2 
 sbi-r.1   8068982   histone deacetylase HDT2 
 sbi-r.1   8078710   histone deacetylase HDT3 
 bdi-r.1   100837781   histone deacetylase HDT2 
 bdi-r.1   100835633   histone deacetylase HDT2 

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Top 50 coexpressed genes to 107912781 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107912781 (ghi-r.1 coexpression data)

CoexMap"107912781"


ghiLOC107912781 | Entrez gene ID : 107912781    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 2 2 3 2 3 3 2 2 3 1 3 3 1 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_016696596.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016696596.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016696596.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107912781
ghi-r.1
for
107891646
ghi-r.1
for
107905356
ghi-r.1
for
107906652
ath-u.5
for
HD2C
ath-u.5
for
HDA3
ath-u.5
for
HD2B
bra-r.6
for
103856522
bra-r.6
for
103851458
bna-r.1
for
125583208
bna-r.1
for
106427797
cit-r.1
for
102618548
cit-r.1
for
102615049
gma-u.5
for
HDT2
gma-u.5
for
HDT4
gma-u.5
for
100792094
vvi-u.5
for
100256817
vvi-u.5
for
100252840
ppo-u.5
for
7474933
ppo-u.5
for
18100075
ppo-u.5
for
18097993
mtr-u.5
for
11434112
mtr-u.5
for
11434564
mtr-u.5
for
112416804
sly-u.5
for
101244607
sly-u.5
for
101262270
sot-r.1
for
102595265
sot-r.1
for
102595604
nta-r.1
for
107776644
nta-r.1
for
107782996
nta-r.1
for
107792079
osa-u.5
for
4339823
zma-u.5
for
103636373
zma-u.5
for
103636374
zma-u.5
for
103636709
tae-r.2
for
123050863
tae-r.2
for
123071217
tae-r.2
for
123183440
hvu-r.1
for
123452961
sbi-r.1
for
8066575
sbi-r.1
for
8068982
sbi-r.1
for
8078710
bdi-r.1
for
100837781
bdi-r.1
for
100835633


Ortholog ID: 1463
Species ghi ghi ghi ath ath ath bra bra bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa zma zma zma tae tae tae hvu sbi sbi sbi bdi bdi
Symbol LOC107912781 LOC107905356 LOC107955725 HD2C HDA3 HD2B LOC103856522 LOC103845525 LOC106372652 LOC106443312 LOC102618548 LOC102615049 HDT4 LOC100792094 HD2A LOC100256817 LOC100252840 LOC7474933 LOC18100075 LOC18097993 LOC11434112 LOC11434564 LOC112416804 LOC101244607 LOC101262270 LOC102595265 LOC102595604 LOC107776644 LOC107782996 LOC107798125 LOC4339823 LOC103636373 LOC103636374 LOC542355 LOC123050863 LOC123183440 LOC780626 LOC123452961 LOC8066575 LOC8068982 LOC8078710 LOC100837781 LOC100835633
Function* histone deacetylase HDT1 histone deacetylase HDT3 histone deacetylase HDT1 histone deacetylase 2C histone deacetylase 3 histone deacetylase 2B histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT3 histone deacetylase HDT2-like histone deacetylase HDT1-like histone deacetylase HDT1 histone deacetylase HDT1-like uncharacterized LOC100792094 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1-like histone deacetylase HDT1-like histone deacetylase HDT1-like histone deacetylase HDT2 histone deacetylase HDT3-like histone deacetylase HDT1-like histone deacetylase103 histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2-like histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT3 histone deacetylase HDT2 histone deacetylase HDT2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03040 Spliceosome 2
ghi04075 Plant hormone signal transduction 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03040 Spliceosome 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03018 RNA degradation 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03008 Ribosome biogenesis in eukaryotes 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03018 RNA degradation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
osa03010 Ribosome 5
osa00270 Cysteine and methionine metabolism 2
osa00450 Selenocompound metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03010 Ribosome 7
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107912781 107905356 107955725 831733 823605 832328 103856522 103845525 106372652 106443312 102618548 102615049 100795506 100792094 547649 100256817 100252840 7474933 18100075 18097993 11434112 11434564 112416804 101244607 101262270 102595265 102595604 107776644 107782996 107798125 4339823 103636373 103636374 542355 123050863 123183440 780626 123452961 8066575 8068982 8078710 100837781 100835633
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