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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107917744   UBP1-associated protein 2C 
 ath-u.5   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100816590   UBP1-associated protein 2C 
 gma-u.5   100804230   UBP1-associated protein 2C 
 gma-u.5   100794097   UBP1-associated protein 2C 
 vvi-u.5   100248626   uncharacterized LOC100248626 
 ppo-u.5   7491349   UBP1-associated protein 2C 
 ppo-u.5   7470218   UBP1-associated protein 2C 
 ppo-u.5   7455913   UBP1-associated protein 2C 
 mtr-u.5   11444562   UBP1-associated protein 2C 
 mtr-u.5   25502531   UBP1-associated protein 2C 
 sly-u.5   101261559   UBP1-associated protein 2C 
 sly-u.5   101259124   UBP1-associated protein 2C-like 
 osa-u.5   4326641   UBP1-associated protein 2C 
 zma-u.5   100382178   UBP1-associated protein 2C 
 zma-u.5   100284566   heterogeneous nuclear ribonucleoprotein A3-like protein 2 

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Top 50 coexpressed genes to 107917744 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107917744 (ghi-r.1 coexpression data)

CoexMap"107917744"


ghiLOC107917744 | Entrez gene ID : 107917744    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 3 1 3 2 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_040942828.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_040942828.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040942828.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107917744
ath-u.5
for
AT3G15010
gma-u.5
for
100816590
gma-u.5
for
100804230
gma-u.5
for
100794097
vvi-u.5
for
100248626
ppo-u.5
for
7491349
ppo-u.5
for
7470218
ppo-u.5
for
7455913
mtr-u.5
for
11444562
mtr-u.5
for
25502531
sly-u.5
for
101261559
sly-u.5
for
101259124
osa-u.5
for
4326641
zma-u.5
for
100382178
zma-u.5
for
100284566


Ortholog ID: 4905
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC107917736 LOC107948717 AT3G15010 LOC103868443 LOC103871138 LOC106451461 LOC106436432 LOC102614751 LOC100776220 LOC100804230 LOC100248626 LOC7491349 LOC7470218 LOC25502531 LOC11444562 LOC101259124 LOC101261559 LOC102605340 LOC102604895 LOC107811627 LOC107759935 LOC4326641 LOC100284566 LOC100382178 LOC123078559 LOC123070113 LOC123443873 LOC8084824 LOC100825606
Function* UBP1-associated protein 2C UBP1-associated protein 2C RNA-binding (RRM/RBD/RNP motifs) family protein UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C uncharacterized LOC100248626 UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C heterogeneous nuclear ribonucleoprotein A3-like protein 2 UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit00270 Cysteine and methionine metabolism 2
cit00350 Tyrosine metabolism 2
cit00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03040 Spliceosome 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107917736 107948717 820730 103868443 103871138 106451461 106436432 102614751 100776220 100804230 100248626 7491349 7470218 25502531 11444562 101259124 101261559 102605340 102604895 107811627 107759935 4326641 100284566 100382178 123078559 123070113 123443873 8084824 100825606
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