ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107918523	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ghi-r.1	107916127	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ghi-r.1	107918891	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ghi-r.1	107926137	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ath-u.5	DXPS1	1-deoxy-D-xylulose 5-phosphate synthase 1
ath-u.5	CLA1	Deoxyxylulose-5-phosphate synthase
ath-u.5	DXPS3	1-deoxy-D-xylulose 5-phosphate synthase 3
bra-r.6	103860788	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
bra-r.6	103859911	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
bra-r.6	103846726	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
bna-r.1	125607096	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
bna-r.1	106372413	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like
bna-r.1	111214189	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like
cit-r.1	102606967	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
cit-r.1	102618368	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
cit-r.1	102620503	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
gma-u.5	100799983	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
gma-u.5	DXS1	1-deoxy-D-xylulose 5-phosphate synthase 1
gma-u.5	100786607	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
vvi-u.5	100247834	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
vvi-u.5	100268079	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
vvi-u.5	100252520	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ppo-u.5	7469091	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ppo-u.5	112327902	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-u.5	7462973	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	25501402	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
mtr-u.5	11405342	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11441515	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
sly-u.5	dxs2	1-deoxy-D-xylulose 5-phosphate synthase 2
sly-u.5	101260957	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sly-u.5	DXS	1-D-deoxyxylulose 5-phosphate synthase
sot-r.1	102598525	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
sot-r.1	102600007	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sot-r.1	DXS1	1-D-deoxyxylulose 5-phosphate synthase
nta-r.1	107820860	putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
nta-r.1	107773391	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
nta-r.1	107790348	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
osa-u.5	4340090	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
osa-u.5	4338768	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like
osa-u.5	4342614	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
zma-u.5	606430	deoxy xylulose synthase 2
zma-u.5	606484	deoxy xylulose synthase 1
zma-u.5	100384006	uncharacterized LOC100384006
tae-r.2	123038305	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
tae-r.2	123039743	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
tae-r.2	123055375	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic
hvu-r.1	123418768	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
hvu-r.1	123441346	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic
hvu-r.1	123431353	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
sbi-r.1	8063650	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
sbi-r.1	8063654	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
sbi-r.1	8070720	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
bdi-r.1	100839607	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic
bdi-r.1	100821434	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
cre-r.1	CHLRE_07g356350v5	uncharacterized protein

Top 50 coexpressed genes to 107918523 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107918523 (ghi-r.1 coexpression data)

CoexMap"107918523"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00730 [list] [network] Thiamine metabolism (69 genes)

ghi00900 [list] [network] Terpenoid backbone biosynthesis (143 genes)

GO BP

GO:0016114 [list] [network] terpenoid biosynthetic process

(203 genes)

IEA

GO CC

GO MF

GO:0008661 [list] [network] 1-deoxy-D-xylulose-5-phosphate synthase activity

(11 genes)

IEA

Protein

XP_016703586.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cyto 1, nucl 1, vacu 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1

(predict for XP_016703586.1)

Subcellular
localization
TargetP

chlo 7

(predict for XP_016703586.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107918523	ghi-r.1 for 107916127	ghi-r.1 for 107918891	ghi-r.1 for 107926137	ath-u.5 for DXPS1	ath-u.5 for CLA1	ath-u.5 for DXPS3	bra-r.6 for 103860788	bra-r.6 for 103859911	bra-r.6 for 103846726	bna-r.1 for 125607096	bna-r.1 for 106372413	bna-r.1 for 111214189	cit-r.1 for 102606967	cit-r.1 for 102618368	cit-r.1 for 102620503	gma-u.5 for 100799983	gma-u.5 for DXS1	gma-u.5 for 100786607	vvi-u.5 for 100247834	vvi-u.5 for 100268079	vvi-u.5 for 100252520	ppo-u.5 for 7469091	ppo-u.5 for 112327902	ppo-u.5 for 7462973	mtr-u.5 for 25501402	mtr-u.5 for 11405342	mtr-u.5 for 11441515	sly-u.5 for dxs2	sly-u.5 for 101260957	sly-u.5 for DXS	sot-r.1 for 102598525	sot-r.1 for 102600007	sot-r.1 for DXS1	nta-r.1 for 107820860	nta-r.1 for 107773391	nta-r.1 for 107790348	osa-u.5 for 4340090	osa-u.5 for 4338768	osa-u.5 for 4342614	zma-u.5 for 606430	zma-u.5 for 606484	zma-u.5 for 100384006	tae-r.2 for 123038305	tae-r.2 for 123039743	tae-r.2 for 123055375	hvu-r.1 for 123418768	hvu-r.1 for 123441346	hvu-r.1 for 123431353	sbi-r.1 for 8063650	sbi-r.1 for 8063654	sbi-r.1 for 8070720	bdi-r.1 for 100839607	bdi-r.1 for 100821434	cre-r.1 for CHLRE_07g356350v5

Ortholog

Ortholog ID: 1108

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107918891

LOC107942694

LOC107897631

DXPS1

CLA1

DXPS3

DXS1

dxs2

DXS

DXS1

Function^*

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose 5-phosphate synthase 1

Deoxyxylulose-5-phosphate synthase

1-deoxy-D-xylulose 5-phosphate synthase 3

1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like

1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose 5-phosphate synthase 1

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose 5-phosphate synthase 2

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-D-deoxyxylulose 5-phosphate synthase

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-D-deoxyxylulose 5-phosphate synthase

putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

deoxy xylulose synthase 2

deoxy xylulose synthase 1

uncharacterized LOC100384006

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00730	Thiamine metabolism	5
ghi00900	Terpenoid backbone biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi00730	Thiamine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	7
ghi00906	Carotenoid biosynthesis	2
ghi00730	Thiamine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	3
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	5
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	3
bra00730	Thiamine metabolism	2
bra00900	Terpenoid backbone biosynthesis	2
bra00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	3
bra04712	Circadian rhythm - plant	2
bra03060	Protein export	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00730	Thiamine metabolism	2
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00730	Thiamine metabolism	2
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00730	Thiamine metabolism	2
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00730	Thiamine metabolism	6
bna00900	Terpenoid backbone biosynthesis	6
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2
cit01230	Biosynthesis of amino acids	2
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	7
cit00196	Photosynthesis - antenna proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	4
gma01240	Biosynthesis of cofactors	3
gma00900	Terpenoid backbone biosynthesis	3
gma00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	5
gma00906	Carotenoid biosynthesis	4
gma00900	Terpenoid backbone biosynthesis	4
gma00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	4
gma00730	Thiamine metabolism	3
gma00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	2
vvi01200	Carbon metabolism	2
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00906	Carotenoid biosynthesis	7
mtr00900	Terpenoid backbone biosynthesis	4
mtr00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	8
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00860	Porphyrin metabolism	9
sly01240	Biosynthesis of cofactors	5
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	5
sot00909	Sesquiterpenoid and triterpenoid biosynthesis	3
sot00280	Valine, leucine and isoleucine degradation	2
sot00650	Butanoate metabolism	2
sot00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00196	Photosynthesis - antenna proteins	14
sot00860	Porphyrin metabolism	4
sot00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00730	Thiamine metabolism	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00196	Photosynthesis - antenna proteins	8
nta00860	Porphyrin metabolism	4
nta00900	Terpenoid backbone biosynthesis	4
nta00730	Thiamine metabolism	2
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	10
nta00900	Terpenoid backbone biosynthesis	4
nta00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	5
osa00906	Carotenoid biosynthesis	2
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00904	Diterpenoid biosynthesis	8
osa00900	Terpenoid backbone biosynthesis	4
osa01040	Biosynthesis of unsaturated fatty acids	2
osa01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	3
zma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	9
tae00196	Photosynthesis - antenna proteins	5
tae00730	Thiamine metabolism	3
tae00900	Terpenoid backbone biosynthesis	3
tae00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00730	Thiamine metabolism	5
tae00900	Terpenoid backbone biosynthesis	5
tae00904	Diterpenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	8
tae01240	Biosynthesis of cofactors	5
tae00196	Photosynthesis - antenna proteins	5
tae00730	Thiamine metabolism	3
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	6
hvu00592	alpha-Linolenic acid metabolism	2
hvu00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00860	Porphyrin metabolism	4
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00904	Diterpenoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00730	Thiamine metabolism	3
sbi00900	Terpenoid backbone biosynthesis	3
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00730	Thiamine metabolism	3
sbi00900	Terpenoid backbone biosynthesis	3
sbi04712	Circadian rhythm - plant	3
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	6
bdi00900	Terpenoid backbone biosynthesis	3
bdi00196	Photosynthesis - antenna proteins	2
bdi00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	3
bdi00900	Terpenoid backbone biosynthesis	3
bdi00190	Oxidative phosphorylation	3
bdi04075	Plant hormone signal transduction	3
bdi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00860	Porphyrin metabolism	9
cre01240	Biosynthesis of cofactors	6
cre00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

107918891

107942694

107897631

821704

827230

831009

103860788

103846726

103870527

106372413

106391316

106400791

102606967

102618368

102620503

100301901

100789279

100814637

100247834

100268079

100252520

7469091

7462973

18102278

11405342

11441515

11432476

101251053

101260957

544220

102598525

102600007

102577792

107820860

107790348

107818796

4340090

4338768

4342614

606430

606484

100384006

123055375

123175967

123132478

123418768

123441346

123431353

8063650

8070720

8085126

100839607

100821434

5727627

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107918523 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107918523 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**