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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121212718   SNF2 domain-containing protein CLASSY 3 
 ath-u.5   CHR40   chromatin remodeling 40 
 ath-u.5   chr31   chromatin remodeling 31 
 bra-r.6   103828642   SNF2 domain-containing protein CLASSY 4 
 bra-r.6   103860031   SNF2 domain-containing protein CLASSY 4 
 bra-r.6   103844121   SNF2 domain-containing protein CLASSY 3 
 bna-r.1   106450568   SNF2 domain-containing protein CLASSY 4-like 
 bna-r.1   106439595   SNF2 domain-containing protein CLASSY 4 
 cit-r.1   102613667   SNF2 domain-containing protein CLASSY 3-like 
 gma-u.5   100806733   SNF2 domain-containing protein CLASSY 3 
 gma-u.5   100807262   SNF2 domain-containing protein CLASSY 3 
 sly-u.5   101265473   SNF2 domain-containing protein CLASSY 4-like 
 sot-r.1   107060234   SNF2 domain-containing protein CLASSY 4-like 
 nta-r.1   107809717   SNF2 domain-containing protein CLASSY 4-like 
 nta-r.1   107779582   SNF2 domain-containing protein CLASSY 4-like 
 osa-u.5   4338690   SNF2 domain-containing protein CLASSY 4 
 zma-u.5   103630322   SNF2 domain-containing protein CLASSY 4 
 tae-r.2   123061480   SNF2 domain-containing protein CLASSY 3 
 hvu-r.1   123442278   SNF2 domain-containing protein CLASSY 3-like 
 sbi-r.1   8076856   SNF2 domain-containing protein CLASSY 4 
 bdi-r.1   100831563   SNF2 domain-containing protein CLASSY 3-like 
 bdi-r.1   100833676   SNF2 domain-containing protein CLASSY 1 

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Top 50 coexpressed genes to 121212718 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121212718 (ghi-r.1 coexpression data)

CoexMap"107919284"


ghiLOC107919284 | Entrez gene ID : 107919284    
Species ghi ath bra bna cit gma sly sot nta osa zma tae hvu sbi bdi mtr cre ppo vvi
Paralog 1 2 3 2 1 2 1 1 2 1 1 1 1 1 2 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03440 [list] [network] Homologous recombination (106 genes)
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (35 genes)  IEA  
GO CC
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (93 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040965654.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_040965654.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_040965654.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121212718
ath-u.5
for
CHR40
ath-u.5
for
chr31
bra-r.6
for
103828642
bra-r.6
for
103860031
bra-r.6
for
103844121
bna-r.1
for
106450568
bna-r.1
for
106439595
cit-r.1
for
102613667
gma-u.5
for
100806733
gma-u.5
for
100807262
sly-u.5
for
101265473
sot-r.1
for
107060234
nta-r.1
for
107809717
nta-r.1
for
107779582
osa-u.5
for
4338690
zma-u.5
for
103630322
tae-r.2
for
123061480
hvu-r.1
for
123442278
sbi-r.1
for
8076856
bdi-r.1
for
100831563
bdi-r.1
for
100833676


Ortholog ID: 1747
Species ghi ath ath bra bra bra bna bna cit gma gma sly sly sot sot nta nta osa zma tae tae hvu sbi bdi bdi
Symbol LOC121212718 CHR40 chr31 LOC103828642 LOC103860031 LOC103844121 LOC106414127 LOC106397725 LOC102613667 LOC100806733 LOC100807262 LOC101265473 LOC101252104 LOC107060232 LOC102589702 LOC107809717 LOC107779582 LOC4338690 LOC103630322 LOC123131456 LOC123181895 LOC123442278 LOC8076856 LOC100831563 LOC100833676
Function* SNF2 domain-containing protein CLASSY 3 chromatin remodeling 40 chromatin remodeling 31 SNF2 domain-containing protein CLASSY 4 SNF2 domain-containing protein CLASSY 4 SNF2 domain-containing protein CLASSY 3 SNF2 domain-containing protein CLASSY 4-like SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 3 SNF2 domain-containing protein CLASSY 3 SNF2 domain-containing protein CLASSY 4-like SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 4-like SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 4-like SNF2 domain-containing protein CLASSY 4-like SNF2 domain-containing protein CLASSY 4 SNF2 domain-containing protein CLASSY 4 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 4 SNF2 domain-containing protein CLASSY 3-like SNF2 domain-containing protein CLASSY 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi00100 Steroid biosynthesis 3
ghi03013 Nucleocytoplasmic transport 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta04146 Peroxisome 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta04142 Lysosome 2
nta04148 Efferocytosis 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00562 Inositol phosphate metabolism 2
hvu04070 Phosphatidylinositol signaling system 2
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121212718 822023 837051 103828642 103860031 103844121 106414127 106397725 102613667 100806733 100807262 101265473 101252104 107060232 102589702 107809717 107779582 4338690 103630322 123131456 123181895 123442278 8076856 100831563 100833676
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