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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107920225   cytochrome c-type biogenesis ccda-like chloroplastic protein 2 
 ghi-r.1   107895296   cytochrome c-type biogenesis ccda-like chloroplastic protein 2 
 ath-u.5   CcdA   cytochrome c biogenesis protein family 
 bra-r.6   103851974   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 bna-r.1   106380937   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 bna-r.1   106390137   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 cit-r.1   102627188   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 gma-u.5   100815609   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 gma-u.5   CCDA   cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like 
 vvi-u.5   100245228   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 ppo-u.5   18095650   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 mtr-u.5   25502555   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 sly-u.5   101268704   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 sot-r.1   102585427   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 nta-r.1   107765077   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 nta-r.1   107810678   cytochrome c-type biogenesis ccda-like chloroplastic protein 
 osa-u.5   4349738   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 osa-u.5   9266150   cytochrome c-type biogenesis ccda-like chloroplastic protein 2 
 zma-u.5   103647117   cytochrome c-type biogenesis ccda-like chloroplastic protein 2 
 tae-r.2   123111240   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 tae-r.2   123103062   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 tae-r.2   123120332   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 hvu-r.1   123396984   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 sbi-r.1   8069285   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 bdi-r.1   100834559   cytochrome c-type biogenesis ccda-like chloroplastic protein 1 
 cre-r.1   CHLRE_07g357800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107920225 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107920225 (ghi-r.1 coexpression data)

CoexMap"107920225"


ghiLOC107920225 | Entrez gene ID : 107920225    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0017004 [list] [network] cytochrome complex assembly  (38 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (8195 genes)  IEA  
GO MF
Protein XP_016705301.1 [sequence] [blastp]
XP_040965004.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  E.R. 1  (predict for XP_016705301.1)
chlo 9,  E.R. 1  (predict for XP_040965004.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_016705301.1)
chlo 2  (predict for XP_040965004.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107920225
ghi-r.1
for
107895296
ath-u.5
for
CcdA
bra-r.6
for
103851974
bna-r.1
for
106380937
bna-r.1
for
106390137
cit-r.1
for
102627188
gma-u.5
for
100815609
gma-u.5
for
CCDA
vvi-u.5
for
100245228
ppo-u.5
for
18095650
mtr-u.5
for
25502555
sly-u.5
for
101268704
sot-r.1
for
102585427
nta-r.1
for
107765077
nta-r.1
for
107810678
osa-u.5
for
4349738
osa-u.5
for
9266150
zma-u.5
for
103647117
tae-r.2
for
123111240
tae-r.2
for
123103062
tae-r.2
for
123120332
hvu-r.1
for
123396984
sbi-r.1
for
8069285
bdi-r.1
for
100834559
cre-r.1
for
CHLRE_07g357800v5


Ortholog ID: 9735
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107920225 LOC107895296 CcdA LOC103851974 LOC106380937 LOC106390137 LOC102627188 LOC100815609 CCDA LOC100245228 LOC18095650 LOC25502555 LOC101268704 LOC102585427 LOC107765077 LOC107810678 LOC4349738 LOC9266150 LOC103647117 LOC123111240 LOC123103062 LOC123120332 LOC123396984 LOC8069285 LOC100834559 CHLRE_07g357800v5
Function* cytochrome c-type biogenesis ccda-like chloroplastic protein 2 cytochrome c-type biogenesis ccda-like chloroplastic protein 2 cytochrome c biogenesis protein family cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 2 cytochrome c-type biogenesis ccda-like chloroplastic protein 2 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 cytochrome c-type biogenesis ccda-like chloroplastic protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi00860 Porphyrin metabolism 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00860 Porphyrin metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00053 Ascorbate and aldarate metabolism 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00730 Thiamine metabolism 2
bra00500 Starch and sucrose metabolism 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107920225 107895296 835517 103851974 106380937 106390137 102627188 100815609 100807029 100245228 18095650 25502555 101268704 102585427 107765077 107810678 4349738 9266150 103647117 123111240 123103062 123120332 123396984 8069285 100834559 5729216
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