ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107920564	probable hexosyltransferase MUCI70
ath-u.5	AT1G28240	strawberry notch protein (DUF616)
ath-u.5	AT1G53040	tRNA (met) cytidine acetyltransferase, putative (DUF616)
gma-u.5	100810918	probable hexosyltransferase MUCI70
gma-u.5	100804922	probable hexosyltransferase MUCI70
gma-u.5	100792761	probable hexosyltransferase MUCI70
vvi-u.5	100246918	probable hexosyltransferase MUCI70
vvi-u.5	100256311	probable hexosyltransferase MUCI70
ppo-u.5	18103028	probable hexosyltransferase MUCI70
ppo-u.5	18095581	probable hexosyltransferase MUCI70
ppo-u.5	7477403	probable hexosyltransferase MUCI70
mtr-u.5	11441256	probable hexosyltransferase MUCI70
mtr-u.5	25493158	probable hexosyltransferase MUCI70
mtr-u.5	11413571	probable hexosyltransferase MUCI70
sly-u.5	101254615	probable hexosyltransferase MUCI70
sly-u.5	101247562	probable hexosyltransferase MUCI70
osa-u.5	4323906	probable hexosyltransferase MUCI70
osa-u.5	4339416	probable hexosyltransferase MUCI70
zma-u.5	103635859	Inner membrane protein oxaA
zma-u.5	103635853	Inner membrane protein oxaA

Top 50 coexpressed genes to 107920564 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107920564 (ghi-r.1 coexpression data)

CoexMap"107920564"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016705813.1 [sequence] [blastp]
XP_016705814.1 [sequence] [blastp]
XP_016705815.1 [sequence] [blastp]
XP_016705816.1 [sequence] [blastp]
XP_040965024.1 [sequence] [blastp]
XP_040965025.1 [sequence] [blastp]
XP_040965026.1 [sequence] [blastp]
XP_040965028.1 [sequence] [blastp]
XP_040965029.1 [sequence] [blastp]
XP_040965030.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 2, cyto_nucl 2, nucl 1, mito 1, plas 1, mito_plas 1	(predict for XP_016705813.1)
chlo 5, cyto 2, cyto_nucl 2, nucl 1, mito 1, plas 1, mito_plas 1	(predict for XP_016705814.1)
chlo 5, cyto 2, cyto_nucl 2, nucl 1, mito 1, plas 1, mito_plas 1	(predict for XP_016705815.1)
chlo 4, cyto 2, cyto_nucl 2, nucl 1, plas 1, E.R. 1, E.R._plas 1	(predict for XP_016705816.1)
chlo 5, cyto 2, cyto_nucl 2, nucl 1, mito 1, plas 1, mito_plas 1	(predict for XP_040965024.1)
chlo 5, cyto 2, cyto_nucl 2, nucl 1, mito 1, plas 1, mito_plas 1	(predict for XP_040965025.1)
cyto 4, cysk 2, cysk_plas 1, nucl 1, pero 1	(predict for XP_040965026.1)
cyto 4, cysk 2, cysk_plas 1, nucl 1, pero 1	(predict for XP_040965028.1)
cyto 3, E.R. 2, pero 2, nucl 1, mito 1, extr 1, vacu 1	(predict for XP_040965029.1)
cyto 3, E.R. 2, pero 2, nucl 1, mito 1, extr 1, vacu 1	(predict for XP_040965030.1)

Subcellular
localization
TargetP

other 4, mito 3	(predict for XP_016705813.1)
other 4, mito 3	(predict for XP_016705814.1)
other 4, mito 3	(predict for XP_016705815.1)
other 4, mito 3	(predict for XP_016705816.1)
other 4, mito 3	(predict for XP_040965024.1)
other 4, mito 3	(predict for XP_040965025.1)
other 8	(predict for XP_040965026.1)
other 8	(predict for XP_040965028.1)
other 9	(predict for XP_040965029.1)
other 9	(predict for XP_040965030.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107920564	ath-u.5 for AT1G28240	ath-u.5 for AT1G53040	gma-u.5 for 100810918	gma-u.5 for 100804922	gma-u.5 for 100792761	vvi-u.5 for 100246918	vvi-u.5 for 100256311	ppo-u.5 for 18103028	ppo-u.5 for 18095581	ppo-u.5 for 7477403	mtr-u.5 for 11441256	mtr-u.5 for 25493158	mtr-u.5 for 11413571	sly-u.5 for 101254615	sly-u.5 for 101247562	osa-u.5 for 4323906	osa-u.5 for 4339416	zma-u.5 for 103635859	zma-u.5 for 103635853

Ortholog

Ortholog ID: 1406

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable hexosyltransferase MUCI70

tRNA (met) cytidine acetyltransferase, putative (DUF616)

strawberry notch protein (DUF616)

uncharacterized LOC103829026

uncharacterized LOC103832699

probable hexosyltransferase MUCI70

uncharacterized LOC102582809

uncharacterized LOC102589017

putative hexosyltransferase MUCI70

probable hexosyltransferase MUCI70

uncharacterized LOC103630624

probable hexosyltransferase MUCI70

uncharacterized LOC8085901

uncharacterized LOC8067528

uncharacterized LOC100838689

uncharacterized LOC100826851

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00541	Biosynthesis of various nucleotide sugars	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	2
ath03015	mRNA surveillance pathway	2
ath00230	Purine metabolism	2
ath00240	Pyrimidine metabolism	2
ath01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	3
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra01230	Biosynthesis of amino acids	4
bra00260	Glycine, serine and threonine metabolism	3
bra01240	Biosynthesis of cofactors	3
bra00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma04144	Endocytosis	2
gma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot04144	Endocytosis	2
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04145	Phagosome	2
nta04148	Efferocytosis	2
nta04517	IgSF CAM signaling	2
nta04518	Integrin signaling	2
nta04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	3
osa01232	Nucleotide metabolism	3
osa04144	Endocytosis	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	3
osa01232	Nucleotide metabolism	3
osa01250	Biosynthesis of nucleotide sugars	2
osa01240	Biosynthesis of cofactors	2
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01250	Biosynthesis of nucleotide sugars	4
tae00190	Oxidative phosphorylation	3
tae00020	Citrate cycle (TCA cycle)	3
tae00270	Cysteine and methionine metabolism	3
tae00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

Expression

Expression pattern

Entrez Gene ID^*

107916591

121230895

841738

839718

103829026

103832699

106358054

106376751

102625940

102625961

100810247

100783387

100256311

100246918

7477403

7462332

11413571

11441256

101247562

102582809

102589017

107773981

107771955

4323906

4339416

103630624

123064611

123182657

123448670

123447017

8085901

8067528

100838689

100826851

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Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	2	3	3	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107920564 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107920564 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**