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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107920712   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 ath-u.5   SHH2   DNA-BINDING TRANSCRIPTION FACTOR 2 
 gma-u.5   100785646   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 gma-u.5   100783895   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 vvi-u.5   100246907   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 ppo-u.5   18103289   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 ppo-u.5   7485138   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 mtr-u.5   11413543   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 sly-u.5   101264256   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 osa-u.5   4341060   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 osa-u.5   4341065   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 zma-u.5   100279552   uncharacterized LOC100279552 
 zma-u.5   100273133   uncharacterized LOC100273133 

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Top 50 coexpressed genes to 107920712 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107920712 (ghi-r.1 coexpression data)

CoexMap"107920712"


ghiLOC107920712 | Entrez gene ID : 107920712    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003682 [list] [network] chromatin binding  (366 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016706029.2 [sequence] [blastp]
XP_040965036.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  pero 1  (predict for XP_016706029.2)
nucl 4,  chlo 4,  pero 1  (predict for XP_040965036.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016706029.2)
other 8  (predict for XP_040965036.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107920712
ath-u.5
for
SHH2
gma-u.5
for
100785646
gma-u.5
for
100783895
vvi-u.5
for
100246907
ppo-u.5
for
18103289
ppo-u.5
for
7485138
mtr-u.5
for
11413543
sly-u.5
for
101264256
osa-u.5
for
4341060
osa-u.5
for
4341065
zma-u.5
for
100279552
zma-u.5
for
100273133


Ortholog ID: 6877
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu sbi bdi
Symbol LOC107916862 LOC107920712 SHH2 LOC103869571 LOC103838095 LOC106347039 LOC106434403 LOC102622694 LOC100783895 LOC100785646 LOC100246907 LOC7485138 LOC18103289 LOC11413543 LOC101264256 LOC102589073 LOC107812239 LOC107794857 LOC4341060 LOC4341065 LOC100279552 LOC100273133 LOC123163927 LOC123150778 LOC123412308 LOC8065464 LOC100829075
Function* protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 DNA-BINDING TRANSCRIPTION FACTOR 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 uncharacterized LOC107794857 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 uncharacterized LOC100279552 uncharacterized LOC100273133 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00562 Inositol phosphate metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03015 mRNA surveillance pathway 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03010 Ribosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma04382 Cornified envelope formation 4
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107916862 107920712 821367 103869571 103838095 106347039 106434403 102622694 100783895 100785646 100246907 7485138 18103289 11413543 101264256 102589073 107812239 107794857 4341060 4341065 100279552 100273133 123163927 123150778 123412308 8065464 100829075
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