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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922775   indole-3-glycerol phosphate synthase, chloroplastic 
 ath-u.5   AT2G04400   Aldolase-type TIM barrel family protein 
 ath-u.5   AT5G48220   Aldolase-type TIM barrel family protein 
 gma-u.5   100790882   indole-3-glycerol phosphate synthase, chloroplastic 
 gma-u.5   100788172   indole-3-glycerol phosphate synthase, chloroplastic 
 vvi-u.5   100251045   indole-3-glycerol phosphate synthase, chloroplastic 
 ppo-u.5   7469338   indole-3-glycerol phosphate synthase, chloroplastic 
 mtr-u.5   11429687   indole-3-glycerol phosphate synthase, chloroplastic 
 sly-u.5   101250390   indole-3-glycerol phosphate synthase, chloroplastic 
 osa-u.5   4336102   indole-3-glycerol phosphate synthase, chloroplastic 
 zma-u.5   100274566   Indole-3-glycerol phosphate synthase chloroplastic 

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Top 50 coexpressed genes to 107922775 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922775 (ghi-r.1 coexpression data)

CoexMap"107922775"


ghiLOC107922775 | Entrez gene ID : 107922775    
Species ghi ath gma vvi ppo mtr sly osa zma tae bra nta cit sot bna sbi cre hvu bdi
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (27 genes)  IEA  
GO CC
GO MF
GO:0004425 [list] [network] indole-3-glycerol-phosphate synthase activity  (4 genes)  IEA  
GO:0004640 [list] [network] phosphoribosylanthranilate isomerase activity  (7 genes)  IEA  
Protein XP_016708429.2 [sequence] [blastp]
XP_040937212.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  cyto 1  (predict for XP_016708429.2)
chlo 6,  chlo_mito 4,  mito 2  (predict for XP_040937212.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016708429.2)
chlo 8  (predict for XP_040937212.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922775

.
ath-u.5
for
AT2G04400

.
ath-u.5
for
AT5G48220

.
gma-u.5
for
100790882

.
gma-u.5
for
100788172

.
vvi-u.5
for
100251045

.
ppo-u.5
for
7469338

.
mtr-u.5
for
11429687

.
sly-u.5
for
101250390

.
osa-u.5
for
4336102

.
zma-u.5
for
100274566

.


Ortholog ID: 6482
Species ath ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G48220 AT2G04400 LOC100790882 LOC100788172 LOC101250390 LOC4336102 LOC100274566 LOC103860298 LOC103874936 LOC100251045 LOC7469338 LOC11429687 LOC123053586 LOC123045713 LOC123426964 LOC107912467 LOC107954750 LOC106348973 LOC106361822 CHLRE_13g602350v5 LOC8057502 LOC102596235 LOC102611149 LOC100831910 LOC107794948 LOC107787073
Function* Aldolase-type TIM barrel family protein Aldolase-type TIM barrel family protein indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic Indole-3-glycerol phosphate synthase chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic-like indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic-like uncharacterized protein indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic-like indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic indole-3-glycerol phosphate synthase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00260 Glycine, serine and threonine metabolism 6
ath00270 Cysteine and methionine metabolism 4
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00906 Carotenoid biosynthesis 3
gma00480 Glutathione metabolism 3
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 3
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 4
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sly00061 Fatty acid biosynthesis 2
sly01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 8
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bra00920 Sulfur metabolism 4
bra00260 Glycine, serine and threonine metabolism 3
bra00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
vvi01230 Biosynthesis of amino acids 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr01240 Biosynthesis of cofactors 3
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00450 Selenocompound metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ghi01230 Biosynthesis of amino acids 4
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ghi01230 Biosynthesis of amino acids 4
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 5
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
bna00562 Inositol phosphate metabolism 4
bna00920 Sulfur metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre03010 Ribosome 2
cre00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
sot01240 Biosynthesis of cofactors 2
sot00620 Pyruvate metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit03010 Ribosome 3
cit01210 2-Oxocarboxylic acid metabolism 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 6
bdi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
nta04981 Folate transport and metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834875 814980 100790882 100788172 101250390 4336102 100274566 103860298 103874936 100251045 7469338 11429687 123053586 123045713 123426964 107912467 107954750 106348973 106361822 66056091 8057502 102596235 102611149 100831910 107794948 107787073
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