ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107923959	protein PAT1 homolog 1
ath-u.5	AT3G22270	Topoisomerase II-associated protein PAT1
ath-u.5	AT4G14990	Topoisomerase II-associated protein PAT1
ath-u.5	AT1G79090	topoisomerase II-associated protein
gma-u.5	100787112	protein PAT1 homolog
gma-u.5	100812450	protein PAT1 homolog 1
gma-u.5	100805313	protein PAT1 homolog
vvi-u.5	100267869	protein PAT1 homolog
vvi-u.5	100255521	protein PAT1 homolog 2
ppo-u.5	7454988	protein PAT1 homolog
ppo-u.5	18106064	protein PAT1 homolog 1
ppo-u.5	7480371	protein PAT1 homolog
mtr-u.5	25487016	protein PAT1 homolog
mtr-u.5	25487017	protein PAT1 homolog
mtr-u.5	120577294	protein PAT1 homolog 1
sly-u.5	101260608	protein PAT1 homolog 2
sly-u.5	101253667	protein PAT1 homolog
sly-u.5	101257075	protein PAT1 homolog 1-like
osa-u.5	4325594	protein PAT1 homolog 1
osa-u.5	4329076	protein PAT1 homolog
osa-u.5	4329480	protein PAT1 homolog 1
zma-u.5	103630584	protein PAT1 homolog 1
zma-u.5	109942640	protein PAT1 homolog 1-like
zma-u.5	100383823	Topoisomerase II-associated protein PAT1

Top 50 coexpressed genes to 107923959 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107923959 (ghi-r.1 coexpression data)

CoexMap"107923959"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03018 [list] [network] RNA degradation (286 genes)

GO BP

GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA	(29 genes)	IEA
GO:0033962 [list] [network] P-body assembly	(41 genes)	IEA

GO CC

GO:0000932 [list] [network] P-body

(130 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(3053 genes)

IEA

Protein

XP_040937254.1 [sequence] [blastp]
XP_040937255.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, chlo 2, extr 2, cysk_nucl 1, vacu 1, chlo_mito 1	(predict for XP_040937254.1)
nucl 4, cysk_nucl 2, chlo 2, vacu 1, chlo_mito 1	(predict for XP_040937255.1)

Subcellular
localization
TargetP

other 6	(predict for XP_040937254.1)
other 8	(predict for XP_040937255.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107923959	ath-u.5 for AT3G22270	ath-u.5 for AT4G14990	ath-u.5 for AT1G79090	gma-u.5 for 100787112	gma-u.5 for 100812450	gma-u.5 for 100805313	vvi-u.5 for 100267869	vvi-u.5 for 100255521	ppo-u.5 for 7454988	ppo-u.5 for 18106064	ppo-u.5 for 7480371	mtr-u.5 for 25487016	mtr-u.5 for 25487017	mtr-u.5 for 120577294	sly-u.5 for 101260608	sly-u.5 for 101253667	sly-u.5 for 101257075	osa-u.5 for 4325594	osa-u.5 for 4329076	osa-u.5 for 4329480	zma-u.5 for 103630584	zma-u.5 for 109942640	zma-u.5 for 100383823

Ortholog

Ortholog ID: 921

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein PAT1 homolog 1

protein PAT1 homolog

Topoisomerase II-associated protein PAT1

protein PAT1 homolog 1

protein PAT1 homolog

protein PAT1 homolog 1-like

protein PAT1 homolog

protein PAT1 homolog 1

protein PAT1 homolog 2

protein PAT1 homolog

protein PAT1 homolog 1

protein PAT1 homolog

protein PAT1 homolog 2

uncharacterized LOC102604826

protein PAT1 homolog 1

protein PAT1 homolog

uncharacterized LOC100272651

Topoisomerase II-associated protein PAT1

protein PAT1 homolog 1

protein PAT1 homolog

protein PAT1 homolog 1-like

uncharacterized LOC8067493

uncharacterized LOC8072123

protein PAT1 homolog

protein PAT1 homolog 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit03015	mRNA surveillance pathway	3
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00270	Cysteine and methionine metabolism	3
gma04148	Efferocytosis	3
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03013	Nucleocytoplasmic transport	4
nta04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03013	Nucleocytoplasmic transport	4
nta04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3
tae03082	ATP-dependent chromatin remodeling	3
tae03018	RNA degradation	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00541	Biosynthesis of various nucleotide sugars	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	6
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

107948554

107928350

827158

821797

103834665

103832387

106346757

106353417

102611484

102618153

100779096

100812450

100255521

100267869

7454988

7480371

120577294

25487016

101253667

101260608

102604826

102596910

107794986

107781173

4329480

4329076

100272651

100383823

123139643

123104606

123444512

123447445

8067493

8072123

100835878

100838182

5723634

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	sbi	bdi	nta	tae	cre	sot
Paralog	1	3	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107923959 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107923959 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**