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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924585   ammonium transporter 1 member 4 
 ghi-r.1   107928717   ammonium transporter 1 member 2 
 ghi-r.1   107914949   ammonium transporter 1 member 1 
 ghi-r.1   107896994   ammonium transporter 1 member 1 
 ath-u.5   AMT1;3   ammonium transporter 1;3 
 bra-r.6   103836858   ammonium transporter 1 member 2 
 bra-r.6   103861850   ammonium transporter 1 member 4 
 bra-r.6   103860026   putative ammonium transporter 1 member 5 
 bna-r.1   125597424   ammonium transporter 1 member 1 
 bna-r.1   106374307   ammonium transporter 1 member 4-like 
 bna-r.1   125593233   ammonium transporter 1 member 2 
 cit-r.1   102628413   ammonium transporter 1 member 1 
 gma-u.5   AMT1.3   ammonium transporter AMT1.3 
 gma-u.5   AMT1.4   ammonium transporter AMT1.4 
 gma-u.5   AMT1.5   ammonium transporter AMT1.5 
 vvi-u.5   100258016   ammonium transporter 1 member 1 
 ppo-u.5   7475434   ammonium transporter 1 member 1 
 ppo-u.5   7494760   ammonium transporter 1 member 1 
 mtr-u.5   11425490   ammonium transporter 1 member 1 
 mtr-u.5   11431735   ammonium transporter 1 member 2 
 sly-u.5   AMT1-2   ammonium transporter 
 sly-u.5   AMT1-1   ammonium transporter 1 member 1 
 sot-r.1   102578709   ammonium transporter 1 member 1 
 sot-r.1   102578704   ammonium transporter 1 member 2 
 nta-r.1   107824732   ammonium transporter 1 member 1 
 nta-r.1   107802452   ammonium transporter 1 member 2 
 nta-r.1   107776942   ammonium transporter 1 member 1 
 osa-u.5   4336365   ammonium transporter 1 member 1-like 
 osa-u.5   4330007   ammonium transporter 1 member 3 
 osa-u.5   4330008   ammonium transporter 1 member 2-like 
 zma-u.5   100273369   ammonium transporter3 
 zma-u.5   100272903   ammonium transporter1 
 zma-u.5   100191554   ammonium transporter2 
 tae-r.2   123053879   ammonium transporter 1 member 1 
 tae-r.2   123137496   ammonium transporter 1 member 2 
 tae-r.2   123144848   ammonium transporter 1 member 2-like 
 hvu-r.1   123427217   ammonium transporter 1 member 1 
 hvu-r.1   123402387   ammonium transporter 1 member 2 
 sbi-r.1   8075921   ammonium transporter 1 member 1 
 sbi-r.1   8072485   ammonium transporter 1 member 2 
 bdi-r.1   100840330   ammonium transporter 1 member 2 
 bdi-r.1   100835289   ammonium transporter 1 member 1 
 cre-r.1   CHLRE_03g159254v5   uncharacterized protein 
 cre-r.1   CHLRE_13g569850v5   uncharacterized protein 
 cre-r.1   CHLRE_07g355650v5   uncharacterized protein 

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Top 50 coexpressed genes to 107924585 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924585 (ghi-r.1 coexpression data)

CoexMap"107924585"


ghiLOC107924585 | Entrez gene ID : 107924585    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 3 3 1 3 1 2 2 2 2 3 3 3 3 2 2 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0097272 [list] [network] ammonium homeostasis  (12 genes)  IEA  
GO:0072488 [list] [network] ammonium transmembrane transport  (24 genes)  IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2553 genes)  IEA  
GO MF
GO:0008519 [list] [network] ammonium channel activity  (24 genes)  IEA  
Protein XP_016710588.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 2,  plas 2,  E.R._vacu 1,  chlo 1,  nucl 1,  mito_plas 1,  cyto_plas 1  (predict for XP_016710588.1)
Subcellular
localization
TargetP
scret 9,  other 5  (predict for XP_016710588.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924585
ghi-r.1
for
107928717
ghi-r.1
for
107914949
ghi-r.1
for
107896994
ath-u.5
for
AMT1;3
bra-r.6
for
103836858
bra-r.6
for
103861850
bra-r.6
for
103860026
bna-r.1
for
125597424
bna-r.1
for
106374307
bna-r.1
for
125593233
cit-r.1
for
102628413
gma-u.5
for
AMT1.3
gma-u.5
for
AMT1.4
gma-u.5
for
AMT1.5
vvi-u.5
for
100258016
ppo-u.5
for
7475434
ppo-u.5
for
7494760
mtr-u.5
for
11425490
mtr-u.5
for
11431735
sly-u.5
for
AMT1-2
sly-u.5
for
AMT1-1
sot-r.1
for
102578709
sot-r.1
for
102578704
nta-r.1
for
107824732
nta-r.1
for
107802452
nta-r.1
for
107776942
osa-u.5
for
4336365
osa-u.5
for
4330007
osa-u.5
for
4330008
zma-u.5
for
100273369
zma-u.5
for
100272903
zma-u.5
for
100191554
tae-r.2
for
123053879
tae-r.2
for
123137496
tae-r.2
for
123144848
hvu-r.1
for
123427217
hvu-r.1
for
123402387
sbi-r.1
for
8075921
sbi-r.1
for
8072485
bdi-r.1
for
100840330
bdi-r.1
for
100835289
cre-r.1
for
CHLRE_03g159254v5
cre-r.1
for
CHLRE_13g569850v5
cre-r.1
for
CHLRE_07g355650v5


Ortholog ID: 1427
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit gma gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre cre cre
Symbol LOC107924585 LOC107928717 LOC107892566 AMT1;3 AMT1;2 LOC103861850 LOC103860026 LOC103831827 LOC106389781 LOC106356753 LOC106365730 LOC102628413 AMT1.3 AMT1.4 AMT1.2 LOC100258016 LOC7494760 LOC7453549 LOC11431735 AMT1-2 AMT1-1 LOC102578709 LOC102578704 LOC107824732 LOC107802452 LOC107783531 LOC4336365 LOC4330007 LOC4330008 LOC100273369 LOC100272903 LOC100191554 LOC123053879 LOC123144848 LOC100037530 LOC123427217 LOC123402387 LOC8075921 LOC8072485 LOC100840330 LOC100835289 CHLRE_03g159254v5 CHLRE_13g569850v5 CHLRE_07g355650v5
Function* ammonium transporter 1 member 4 ammonium transporter 1 member 2 ammonium transporter 1 member 2 ammonium transporter 1;3 ammonium transporter 1;2 ammonium transporter 1 member 4 putative ammonium transporter 1 member 5 ammonium transporter 1 member 3-like ammonium transporter 1 member 4-like ammonium transporter 1 member 3-like ammonium transporter 1 member 2 ammonium transporter 1 member 1 ammonium transporter AMT1.3 ammonium transporter AMT1.4 ammonium transporter AMT1.2 ammonium transporter 1 member 1 ammonium transporter 1 member 1 ammonium transporter 1 member 2 ammonium transporter 1 member 2 ammonium transporter ammonium transporter 1 member 1 ammonium transporter 1 member 1 ammonium transporter 1 member 2 ammonium transporter 1 member 1 ammonium transporter 1 member 2 ammonium transporter 1 member 2-like ammonium transporter 1 member 1-like ammonium transporter 1 member 3 ammonium transporter 1 member 2-like ammonium transporter3 ammonium transporter1 ammonium transporter2 ammonium transporter 1 member 1 ammonium transporter 1 member 2-like ammonium transporter 1 member 1 ammonium transporter 1 member 1 ammonium transporter 1 member 2 ammonium transporter 1 member 1 ammonium transporter 1 member 2 ammonium transporter 1 member 2 ammonium transporter 1 member 1 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00380 Tryptophan metabolism 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00380 Tryptophan metabolism 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04626 Plant-pathogen interaction 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 5
bra04075 Plant hormone signal transduction 2
bra00730 Thiamine metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00062 Fatty acid elongation 3
bra01212 Fatty acid metabolism 3
bra01040 Biosynthesis of unsaturated fatty acids 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 3
bna00944 Flavone and flavonol biosynthesis 2
bna00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00910 Nitrogen metabolism 2
gma01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00908 Zeatin biosynthesis 5
gma04075 Plant hormone signal transduction 3
gma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 3
ppo00941 Flavonoid biosynthesis 2
ppo00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 4
mtr01200 Carbon metabolism 4
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
mtr00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00920 Sulfur metabolism 7
sly01320 Sulfur cycle 6
sly01230 Biosynthesis of amino acids 4
sly01240 Biosynthesis of cofactors 3
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00061 Fatty acid biosynthesis 2
sot00780 Biotin metabolism 2
sot01212 Fatty acid metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00910 Nitrogen metabolism 2
sot01310 Nitrogen cycle 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 5
nta00941 Flavonoid biosynthesis 4
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 5
nta00941 Flavonoid biosynthesis 4
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 7
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
zma00910 Nitrogen metabolism 3
zma00220 Arginine biosynthesis 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00750 Vitamin B6 metabolism 5
tae01240 Biosynthesis of cofactors 5
tae00030 Pentose phosphate pathway 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae00750 Vitamin B6 metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00750 Vitamin B6 metabolism 2
bdi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924585 107928717 107892566 822018 842786 103861850 103860026 103831827 106389781 106356753 106365730 102628413 100797209 100797759 100796502 100258016 7494760 7453549 11431735 544110 101265282 102578709 102578704 107824732 107802452 107783531 4336365 4330007 4330008 100273369 100272903 100191554 123053879 123144848 100037530 123427217 123402387 8075921 8072485 100840330 100835289 5723011 5719116 5727611
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