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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924720   DNA repair protein RAD5B 
 gma-u.5   102666585   LON peptidase N-terminal domain and RING finger protein 3 
 gma-u.5   100810041   uncharacterized LOC100810041 
 mtr-u.5   25498052   putative E3 ubiquitin-protein ligase RING1a 
 sly-u.5   101252035   putative E3 ubiquitin-protein ligase RING1a 
 sly-u.5   101250772   uncharacterized LOC101250772 
 osa-u.5   4351944   uncharacterized LOC4351944 
 zma-u.5   100191204   uncharacterized LOC100191204 
 zma-u.5   100191180   uncharacterized LOC100191180 

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Top 50 coexpressed genes to 107924720 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924720 (ghi-r.1 coexpression data)

CoexMap"107924720"


ghiLOC107924720 | Entrez gene ID : 107924720    
Species ghi gma mtr sly osa zma bdi hvu bra vvi cit bna ath ppo sbi sot nta cre tae
Paralog 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006302 [list] [network] double-strand break repair  (207 genes)  IEA  
GO CC
GO:0035861 [list] [network] site of double-strand break  (21 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0031491 [list] [network] nucleosome binding  (81 genes)  IEA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (871 genes)  IEA  
Protein XP_016710781.1 [sequence] [blastp]
XP_016710782.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  pero 1  (predict for XP_016710781.1)
nucl 9,  chlo 1,  pero 1  (predict for XP_016710782.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016710781.1)
other 8  (predict for XP_016710782.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924720
gma-u.5
for
102666585
gma-u.5
for
100810041
mtr-u.5
for
25498052
sly-u.5
for
101252035
sly-u.5
for
101250772
osa-u.5
for
4351944
zma-u.5
for
100191204
zma-u.5
for
100191180


Ortholog ID: 8806
Species ghi ghi bna bna gma gma mtr sly sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC107911765 LOC107924720 LOC106370583 LOC106414016 LOC100810041 LOC102666585 LOC25498052 LOC101252035 LOC101250772 LOC102592160 LOC107816971 LOC142179618 LOC4351944 LOC100191180 LOC100191204 LOC123128357 LOC123138203 LOC123403070 LOC8084972 LOC100841891 CHLRE_05g247500v5
Function* E3 ubiquitin-protein ligase TRIM7 DNA repair protein RAD5B uncharacterized LOC106370583 LON peptidase N-terminal domain and RING finger protein 3-like uncharacterized LOC100810041 LON peptidase N-terminal domain and RING finger protein 3 putative E3 ubiquitin-protein ligase RING1a putative E3 ubiquitin-protein ligase RING1a uncharacterized LOC101250772 LON peptidase N-terminal domain and RING finger protein 3-like uncharacterized LOC107816971 uncharacterized LOC142179618 uncharacterized LOC4351944 uncharacterized LOC100191180 uncharacterized LOC100191204 E3 ubiquitin-protein ligase ORTHRUS 2 putative E3 ubiquitin-protein ligase RING1a putative E3 ubiquitin-protein ligase RING1a E3 ubiquitin-protein ligase RING2-B uncharacterized LOC100841891 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
ghi04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
ghi04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107911765 107924720 106370583 106414016 100810041 102666585 25498052 101252035 101250772 102592160 107816971 142179618 4351944 100191180 100191204 123128357 123138203 123403070 8084972 100841891 66053509
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