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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107925929   60S ribosomal protein L6 
 ath-u.5   AT1G18540   Ribosomal protein L6 family protein 
 ath-u.5   AT1G74050   Ribosomal protein L6 family protein 
 ath-u.5   AT1G74060   Ribosomal protein L6 family protein 
 gma-u.5   100499766   uncharacterized LOC100499766 
 gma-u.5   100500022   uncharacterized LOC100500022 
 gma-u.5   100785356   60S ribosomal protein L6-1 
 vvi-u.5   100257150   large ribosomal subunit protein eL6z 
 vvi-u.5   100252724   large ribosomal subunit protein eL6x 
 ppo-u.5   7454890   60S ribosomal protein L6 
 ppo-u.5   7480099   60S ribosomal protein L6 
 mtr-u.5   11432177   60S ribosomal protein L6-3 
 mtr-u.5   11445274   60S ribosomal protein L6 
 sly-u.5   101262004   large ribosomal subunit protein eL6 
 sly-u.5   101252946   large ribosomal subunit protein eL6 
 sly-u.5   101250600   large ribosomal subunit protein eL6 
 osa-u.5   4329831   large ribosomal subunit protein eL6x 
 osa-u.5   4336140   large ribosomal subunit protein eL6x 
 zma-u.5   100191612   60S ribosomal protein L6-like 
 zma-u.5   118476703   60S ribosomal protein L6-3-like 
 zma-u.5   103627361   60S ribosomal protein L6-like 

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Top 50 coexpressed genes to 107925929 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107925929 (ghi-r.1 coexpression data)

CoexMap"107925929"


ghiLOC107925929 | Entrez gene ID : 107925929    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 3 3 2 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (68 genes)  IEA  
GO:0002181 [list] [network] cytoplasmic translation  (214 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (467 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016712174.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_016712174.2)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for XP_016712174.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107925929

.
ath-u.5
for
AT1G18540

.
ath-u.5
for
AT1G74050

.
ath-u.5
for
AT1G74060

.
gma-u.5
for
100499766

.
gma-u.5
for
100500022

.
gma-u.5
for
100785356

.
vvi-u.5
for
100257150

.
vvi-u.5
for
100252724

.
ppo-u.5
for
7454890

.
ppo-u.5
for
7480099

.
mtr-u.5
for
11432177

.
mtr-u.5
for
11445274

.
sly-u.5
for
101262004

.
sly-u.5
for
101252946

.
sly-u.5
for
101250600

.
osa-u.5
for
4329831

.
osa-u.5
for
4336140

.
zma-u.5
for
100191612

.
zma-u.5
for
118476703

.
zma-u.5
for
103627361

.


Ortholog ID: 1642
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G18540 AT1G74050 LOC100499766 LOC100500022 LOC101250600 LOC101252946 LOC4336140 LOC4329831 LOC103653691 LOC103627361 LOC103831880 LOC103852878 LOC100252724 LOC100257150 LOC7480099 LOC7454890 LOC11445274 LOC606333 LOC123137160 LOC123401134 LOC123401691 LOC107899683 LOC121213992 LOC106404617 LOC106427170 CHLRE_01g011000v5 LOC8073569 LOC8055433 LOC102594318 LOC102600468 LOC102608733 LOC102606973 LOC100836469 LOC100823288 LOC107794249 LOC107803255
Function* Ribosomal protein L6 family protein Ribosomal protein L6 family protein uncharacterized LOC100499766 uncharacterized LOC100500022 large ribosomal subunit protein eL6 large ribosomal subunit protein eL6 large ribosomal subunit protein eL6x large ribosomal subunit protein eL6x 60S ribosomal protein L6-like 60S ribosomal protein L6-like 60S ribosomal protein L6-2 60S ribosomal protein L6-3 large ribosomal subunit protein eL6x large ribosomal subunit protein eL6z 60S ribosomal protein L6 60S ribosomal protein L6 60S ribosomal protein L6 60S ribosomal protein L6 60S ribosomal protein L6 60S ribosomal protein L6-like 60S ribosomal protein L6-like 60S ribosomal protein L6 60S ribosomal protein L6-1 60S ribosomal protein L6-2 60S ribosomal protein L6-1-like ribosomal protein L6 60S ribosomal protein L6 60S ribosomal protein L6-3 60S ribosomal protein L6-like 60S ribosomal protein L6-like 60S ribosomal protein L6-like 60S ribosomal protein L6-like 60S ribosomal protein L6 60S ribosomal protein L6-3 large ribosomal subunit protein eL6-like large ribosomal subunit protein eL6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03010 Ribosome 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838435 843744 100499766 100500022 101250600 101252946 4336140 4329831 103653691 103627361 103831880 103852878 100252724 100257150 7480099 7454890 11445274 606333 123137160 123401134 123401691 107899683 121213992 106404617 106427170 5715022 8073569 8055433 102594318 102600468 102608733 102606973 100836469 100823288 107794249 107803255
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