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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107927040   ribulose bisphosphate carboxylase small chain clone 512 
 ath-u.5   RBCS1A   ribulose bisphosphate carboxylase small chain 1A 
 ath-u.5   RBCS3B   Ribulose bisphosphate carboxylase (small chain) family protein 
 ath-u.5   RBCS2B   Ribulose bisphosphate carboxylase (small chain) family protein 
 gma-u.5   RBCS2   ribulose bisphosphate carboxylase small chain 1, chloroplastic-like 
 gma-u.5   100527679   putative ribulose bisphosphate carboxylase small chain 
 gma-u.5   RBCS1   Ribulose bisphosphate carboxylase small chain 1, chloroplastic 
 vvi-u.5   100267942   ribulose bisphosphate carboxylase small chain, chloroplastic-like 
 vvi-u.5   100256536   ribulose bisphosphate carboxylase small subunit, chloroplastic 3 
 ppo-u.5   7477424   ribulose bisphosphate carboxylase small subunit, chloroplastic 
 ppo-u.5   18099496   ribulose bisphosphate carboxylase small subunit, chloroplastic 
 ppo-u.5   18107762   ribulose bisphosphate carboxylase small subunit, chloroplastic 3 
 mtr-u.5   11420076   ribulose bisphosphate carboxylase small chain, chloroplastic 
 mtr-u.5   11446762   ribulose bisphosphate carboxylase small chain clone 512 
 mtr-u.5   25497418   ribulose bisphosphate carboxylase small chain 3A, chloroplastic 
 sly-u.5   RBCS4   ribulose bisphosphate carboxylase small chain 3B, chloroplastic-like 
 sly-u.5   101257875   ribulose bisphosphate carboxylase small subunit, chloroplastic-like 
 sly-u.5   rbcS1   ribulose bisphosphate carboxylase small chain 1, chloroplastic 
 osa-u.5   4352021   ribulose bisphosphate carboxylase small subunit, chloroplastic 
 osa-u.5   4352016   ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like 
 osa-u.5   RBCS1   ribulose bisphosphate carboxylase small chain A, chloroplastic-like 
 zma-u.5   542212   ribulose bisphosphate carboxylase small subunit 1 
 zma-u.5   100279574   ribulose bisphosphate carboxylase small subunit 2 

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Top 50 coexpressed genes to 107927040 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107927040 (ghi-r.1 coexpression data)

CoexMap"107927040"


ghiLOC107927040 | Entrez gene ID : 107927040    
Species ghi ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi cre bna nta bdi bra
Paralog 1 3 3 2 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00630 [list] [network] Glyoxylate and dicarboxylate metabolism (192 genes)
ghi00710 [list] [network] Carbon fixation by Calvin cycle (194 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
GO BP
GO CC
GO MF
Protein XP_016713500.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 1,  extr 1,  vacu 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_016713500.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016713500.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107927040

.
ath-u.5
for
RBCS1A

.
ath-u.5
for
RBCS3B

.
ath-u.5
for
RBCS2B

.
gma-u.5
for
RBCS2

.
gma-u.5
for
100527679

.
gma-u.5
for
RBCS1

.
vvi-u.5
for
100267942

.
vvi-u.5
for
100256536

.
ppo-u.5
for
7477424

.
ppo-u.5
for
18099496

.
ppo-u.5
for
18107762

.
mtr-u.5
for
11420076

.
mtr-u.5
for
11446762

.
mtr-u.5
for
25497418

.
sly-u.5
for
RBCS4

.
sly-u.5
for
101257875

.
sly-u.5
for
rbcS1

.
osa-u.5
for
4352021

.
osa-u.5
for
4352016

.
osa-u.5
for
RBCS1

.
zma-u.5
for
542212

.
zma-u.5
for
100279574

.


Ortholog ID: 566
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit bdi bdi nta nta
Symbol RBCS1A RBCS3B LOC547605 RBCS1 RBCS4 RBCS1 LOC4352016 LOC542212 LOC100279574 LOC103852368 LOC103852369 LOC100256536 LOC100267942 LOC18099496 LOC18107762 LOC112416064 LOC25497418 LOC123051264 LOC123051265 LOC123424517 LOC123424519 LOC107927040 LOC107912727 LOC106381060 LOC106352647 CHLRE_02g120150v5 CHLRE_02g120100v5 LOC8070647 LOC102601229 LOC102577450 LOC102612348 LOC100825888 LOC100840557 LOC107802883 LOC142171652
Function* ribulose bisphosphate carboxylase small chain 1A Ribulose bisphosphate carboxylase (small chain) family protein ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 Ribulose bisphosphate carboxylase small chain 1, chloroplastic ribulose bisphosphate carboxylase small chain 3B, chloroplastic-like ribulose bisphosphate carboxylase small chain A, chloroplastic-like ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like ribulose bisphosphate carboxylase small subunit 1 ribulose bisphosphate carboxylase small subunit 2 ribulose bisphosphate carboxylase small chain 1B, chloroplastic ribulose bisphosphate carboxylase small chain 1A, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic 3 ribulose bisphosphate carboxylase small chain, chloroplastic-like ribulose bisphosphate carboxylase small subunit, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic 3 ribulose bisphosphate carboxylase small chain 3A, chloroplastic ribulose bisphosphate carboxylase small chain 3A, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like ribulose bisphosphate carboxylase small subunit, chloroplastic 2 ribulose bisphosphate carboxylase small subunit, chloroplastic 2 ribulose bisphosphate carboxylase small chain clone 512 ribulose bisphosphate carboxylase small chain, chloroplastic-like ribulose bisphosphate carboxylase small subunit 1A, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like uncharacterized protein uncharacterized protein ribulose bisphosphate carboxylase small chain, chloroplastic ribulose bisphosphate carboxylase small chain 2C, chloroplastic ribulose bisphosphate carboxylase small chain 1, chloroplastic-like ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like ribulose bisphosphate carboxylase small chain, chloroplastic ribulose bisphosphate carboxylase small chain, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic ribulose bisphosphate carboxylase small subunit, chloroplastic 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 15
ath00710 Carbon fixation by Calvin cycle 12
ath00630 Glyoxylate and dicarboxylate metabolism 7
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 14
ath00710 Carbon fixation by Calvin cycle 12
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 14
gma01200 Carbon metabolism 14
gma00030 Pentose phosphate pathway 5
gma00010 Glycolysis / Gluconeogenesis 3
gma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 14
gma01200 Carbon metabolism 14
gma00030 Pentose phosphate pathway 5
gma00010 Glycolysis / Gluconeogenesis 3
gma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 13
sly00710 Carbon fixation by Calvin cycle 12
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00030 Pentose phosphate pathway 4
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 8
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00630 Glyoxylate and dicarboxylate metabolism 5
osa00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa01200 Carbon metabolism 9
osa00710 Carbon fixation by Calvin cycle 8
osa00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 7
zma00710 Carbon fixation by Calvin cycle 6
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00195 Photosynthesis 2
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 10
zma01200 Carbon metabolism 10
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
zma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 7
vvi01200 Carbon metabolism 6
vvi00710 Carbon fixation by Calvin cycle 5
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 9
ppo00195 Photosynthesis 5
ppo01200 Carbon metabolism 5
ppo00710 Carbon fixation by Calvin cycle 4
ppo00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00010 Glycolysis / Gluconeogenesis 6
ppo00620 Pyruvate metabolism 4
ppo00071 Fatty acid degradation 3
ppo00350 Tyrosine metabolism 3
ppo00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 7
mtr01200 Carbon metabolism 7
mtr00630 Glyoxylate and dicarboxylate metabolism 6
mtr00500 Starch and sucrose metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 7
mtr01200 Carbon metabolism 7
mtr00630 Glyoxylate and dicarboxylate metabolism 6
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 15
tae01200 Carbon metabolism 15
tae00710 Carbon fixation by Calvin cycle 14
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 13
tae00710 Carbon fixation by Calvin cycle 13
tae01200 Carbon metabolism 13
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 7
hvu00710 Carbon fixation by Calvin cycle 7
hvu01200 Carbon metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 9
hvu01200 Carbon metabolism 9
hvu00630 Glyoxylate and dicarboxylate metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 9
ghi00710 Carbon fixation by Calvin cycle 8
ghi00630 Glyoxylate and dicarboxylate metabolism 7
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 11
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 6
cre00710 Carbon fixation by Calvin cycle 5
cre00630 Glyoxylate and dicarboxylate metabolism 4
cre00190 Oxidative phosphorylation 4
cre00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 8
cre01200 Carbon metabolism 8
cre00195 Photosynthesis 5
cre00190 Oxidative phosphorylation 4
cre00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 14
sot00710 Carbon fixation by Calvin cycle 10
sot00630 Glyoxylate and dicarboxylate metabolism 8
sot00010 Glycolysis / Gluconeogenesis 3
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00630 Glyoxylate and dicarboxylate metabolism 6
sot00710 Carbon fixation by Calvin cycle 6
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 7
bdi01200 Carbon metabolism 7
bdi00710 Carbon fixation by Calvin cycle 5
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00630 Glyoxylate and dicarboxylate metabolism 7
bdi00710 Carbon fixation by Calvin cycle 6
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 8
nta01200 Carbon metabolism 8
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 10
nta01200 Carbon metabolism 10
nta00630 Glyoxylate and dicarboxylate metabolism 7
nta00195 Photosynthesis 4
nta00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843029 833828 547605 100500504 101268337 4352014 4352016 542212 100279574 103852368 103852369 100256536 100267942 18099496 18107762 112416064 25497418 123051264 123051265 123424517 123424519 107927040 107912727 106381060 106352647 5727948 5727949 8070647 102601229 102577450 102612348 100825888 100840557 107802883 142171652
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