ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107927940	ER lumen protein-retaining receptor erd-2.2
ghi-r.1	107908675	ER lumen protein-retaining receptor erd-2.2
ghi-r.1	107922489	ER lumen protein-retaining receptor erd-2.2
ghi-r.1	121226872	ER lumen protein-retaining receptor erd-2.2
ath-u.5	AT2G21190	ER lumen protein retaining receptor family protein
ath-u.5	AT4G38790	ER lumen protein retaining receptor family protein
bra-r.6	103835163	ER lumen protein-retaining receptor erd-2.2
bra-r.6	103830638	ER lumen protein-retaining receptor erd-2.2
bna-r.1	106433169	ER lumen protein-retaining receptor erd-2.2
bna-r.1	106433333	ER lumen protein-retaining receptor erd-2.2-like
cit-r.1	102628990	uncharacterized LOC102628990
cit-r.1	102626803	uncharacterized LOC102626803
cit-r.1	102614764	uncharacterized LOC102614764
gma-u.5	100781933	ER lumen protein-retaining receptor erd-2.2
gma-u.5	100797621	ER lumen protein-retaining receptor erd-2.2
gma-u.5	100803652	ER lumen protein-retaining receptor erd-2.2
vvi-u.5	100265497	uncharacterized LOC100265497
vvi-u.5	100265794	uncharacterized LOC100265794
ppo-u.5	7494271	uncharacterized LOC7494271
ppo-u.5	7479677	uncharacterized LOC7479677
ppo-u.5	7477860	uncharacterized LOC7477860
mtr-u.5	11432127	ER lumen protein-retaining receptor erd-2.2
mtr-u.5	25492851	ER lumen protein-retaining receptor erd-2.2
sly-u.5	101252298	uncharacterized LOC101252298
sly-u.5	101258414	uncharacterized LOC101258414
sot-r.1	102602155	putative ER lumen protein-retaining receptor C28H8.4
sot-r.1	102597590	putative ER lumen protein-retaining receptor C28H8.4
sot-r.1	102593489	putative ER lumen protein-retaining receptor C28H8.4
nta-r.1	107771715	uncharacterized LOC107771715
nta-r.1	107771762	uncharacterized LOC107771762
nta-r.1	107776851	uncharacterized LOC107776851
osa-u.5	4346239	uncharacterized LOC4346239
osa-u.5	4347687	uncharacterized LOC4347687
zma-u.5	100273790	ER lumen protein retaining receptor family protein
zma-u.5	100194013	ER lumen protein retaining receptor family protein
zma-u.5	100282406	ER lumen protein retaining receptor C28H8.4
tae-r.2	123165562	ER lumen protein-retaining receptor erd-2.2
tae-r.2	123157417	ER lumen protein-retaining receptor erd-2.2
tae-r.2	123104565	ER lumen protein-retaining receptor erd-2.2
hvu-r.1	123408507	ER lumen protein-retaining receptor erd-2.2-like
hvu-r.1	123400109	ER lumen protein-retaining receptor erd-2.2-like
sbi-r.1	8066936	putative ER lumen protein-retaining receptor C28H8.4
sbi-r.1	8058044	putative ER lumen protein-retaining receptor C28H8.4
bdi-r.1	100828437	putative ER lumen protein-retaining receptor C28H8.4
bdi-r.1	100841660	putative ER lumen protein-retaining receptor C28H8.4
cre-r.1	CHLRE_13g562475v5	uncharacterized protein

Top 50 coexpressed genes to 107927940 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107927940 (ghi-r.1 coexpression data)

CoexMap"107927940"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006621 [list] [network] protein retention in ER lumen	(39 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(272 genes)	IEA

GO CC

GO:0005801 [list] [network] cis-Golgi network	(49 genes)	IEA
GO:0005783 [list] [network] endoplasmic reticulum	(1428 genes)	IEA
GO:0016020 [list] [network] membrane	(8195 genes)	IEA

GO MF

GO:0046923 [list] [network] ER retention sequence binding

(23 genes)

IEA

Protein

XP_016714563.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, E.R. 2, chlo 1, vacu 1

(predict for XP_016714563.1)

Subcellular
localization
TargetP

mito 9

(predict for XP_016714563.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107927940	ghi-r.1 for 107908675	ghi-r.1 for 107922489	ghi-r.1 for 121226872	ath-u.5 for AT2G21190	ath-u.5 for AT4G38790	bra-r.6 for 103835163	bra-r.6 for 103830638	bna-r.1 for 106433169	bna-r.1 for 106433333	cit-r.1 for 102628990	cit-r.1 for 102626803	cit-r.1 for 102614764	gma-u.5 for 100781933	gma-u.5 for 100797621	gma-u.5 for 100803652	vvi-u.5 for 100265497	vvi-u.5 for 100265794	ppo-u.5 for 7494271	ppo-u.5 for 7479677	ppo-u.5 for 7477860	mtr-u.5 for 11432127	mtr-u.5 for 25492851	sly-u.5 for 101252298	sly-u.5 for 101258414	sot-r.1 for 102602155	sot-r.1 for 102597590	sot-r.1 for 102593489	nta-r.1 for 107771715	nta-r.1 for 107771762	nta-r.1 for 107776851	osa-u.5 for 4346239	osa-u.5 for 4347687	zma-u.5 for 100273790	zma-u.5 for 100194013	zma-u.5 for 100282406	tae-r.2 for 123165562	tae-r.2 for 123157417	tae-r.2 for 123104565	hvu-r.1 for 123408507	hvu-r.1 for 123400109	sbi-r.1 for 8066936	sbi-r.1 for 8058044	bdi-r.1 for 100828437	bdi-r.1 for 100841660	cre-r.1 for CHLRE_13g562475v5

Ortholog

Ortholog ID: 928

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ER lumen protein-retaining receptor erd-2.2

ER lumen protein retaining receptor family protein

ER lumen protein-retaining receptor erd-2.2

ER lumen protein-retaining receptor erd-2.2-like

ER lumen protein-retaining receptor erd-2.2

uncharacterized LOC102628990

uncharacterized LOC102626803

uncharacterized LOC102614764

ER lumen protein-retaining receptor erd-2.2

uncharacterized LOC100265497

uncharacterized LOC100265794

uncharacterized LOC7479677

uncharacterized LOC7477860

ER lumen protein-retaining receptor erd-2.2

uncharacterized LOC101246374

uncharacterized LOC101253632

putative ER lumen protein-retaining receptor C28H8.4

uncharacterized LOC107771715

uncharacterized LOC107803195

uncharacterized LOC107784965

uncharacterized LOC4346239

uncharacterized LOC4347687

ER lumen protein retaining receptor family protein

ER lumen protein retaining receptor C28H8.4

uncharacterized LOC100284075

ER lumen protein-retaining receptor erd-2.2

ER lumen protein-retaining receptor erd-2.2-like

putative ER lumen protein-retaining receptor C28H8.4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	3
bra03015	mRNA surveillance pathway	3
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	3
cit00564	Glycerophospholipid metabolism	2
cit00190	Oxidative phosphorylation	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	4
gma04141	Protein processing in endoplasmic reticulum	4
gma04145	Phagosome	4
gma00270	Cysteine and methionine metabolism	2
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	2
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2
vvi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	8
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
ppo00071	Fatty acid degradation	3
ppo01200	Carbon metabolism	3
ppo00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo04142	Lysosome	4
ppo04145	Phagosome	4
ppo03050	Proteasome	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00062	Fatty acid elongation	3
mtr00073	Cutin, suberine and wax biosynthesis	2
mtr00564	Glycerophospholipid metabolism	2
mtr01040	Biosynthesis of unsaturated fatty acids	2
mtr01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00514	Other types of O-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	2
sly04142	Lysosome	2
sly04145	Phagosome	2
sly04141	Protein processing in endoplasmic reticulum	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	13
sot04145	Phagosome	3
sot03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03060	Protein export	3
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma00510	N-Glycan biosynthesis	2
zma00513	Various types of N-glycan biosynthesis	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	4
hvu04144	Endocytosis	4
hvu04145	Phagosome	2
hvu04148	Efferocytosis	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	7
bdi03060	Protein export	3
bdi04142	Lysosome	2
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	5

Expression

Expression pattern

Entrez Gene ID^*

107922489

107927822

816655

830034

103835163

106431013

106421526

106368814

102628990

102626803

102614764

100803652

100787747

100777294

100265497

100265794

7479677

7477860

11432127

25492851

101246374

101253632

102602155

102593152

102582455

107771715

107803195

107784965

4346239

4347687

100273790

100282406

100284075

123165562

123104565

123152479

123408507

123400109

8066936

8058044

100828437

100841660

5719017

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	2	3	3	2	3	2	2	3	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107927940 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107927940 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**