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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107931808   omega-3 fatty acid desaturase, chloroplastic-like 
 ghi-r.1   121207887   omega-3 fatty acid desaturase, chloroplastic 
 ghi-r.1   107956656   acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like 
 ghi-r.1   107948941   omega-3 fatty acid desaturase, chloroplastic-like 
 ath-u.5   FAD3   fatty acid desaturase 3 
 ath-u.5   FAD8   fatty acid desaturase 8 
 ath-u.5   FAD7   fatty acid desaturase 7 
 bra-r.6   103864998   acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum 
 bra-r.6   103859381   omega-3 fatty acid desaturase, chloroplastic 
 bra-r.6   103867994   acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum 
 bna-r.1   106452545   omega-3 fatty acid desaturase, chloroplastic 
 bna-r.1   111197728   omega-3 fatty acid desaturase, chloroplastic-like 
 bna-r.1   106353041   omega-3 fatty acid desaturase, chloroplastic-like 
 cit-r.1   102611986   omega-3 fatty acid desaturase, chloroplastic-like 
 cit-r.1   102626347   acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like 
 gma-u.5   FAD8.2   omega-3 fatty acid desaturase, chloroplastic 
 gma-u.5   FAD7-1   omega-3 fatty acid desaturase 
 gma-u.5   FAD8-1   omega-3 fatty acid desaturase 
 vvi-u.5   100260414   omega-3 fatty acid desaturase, chloroplastic 
 vvi-u.5   100247097   omega-3 fatty acid desaturase, chloroplastic 
 ppo-u.5   7490323   omega-3 fatty acid desaturase, chloroplastic 
 ppo-u.5   7494502   omega-3 fatty acid desaturase, chloroplastic 
 ppo-u.5   7466077   omega-3 fatty acid desaturase, chloroplastic 
 mtr-u.5   11415576   omega-3 fatty acid desaturase, endoplasmic reticulum 
 mtr-u.5   25490906   omega-3 fatty acid desaturase, endoplasmic reticulum 
 mtr-u.5   25498767   omega-3 fatty acid desaturase, chloroplastic 
 sly-u.5   Fad7   omega-3 fatty acid desaturase 
 sly-u.5   100134915   omega-3 fatty acid desaturase 
 sot-r.1   102597287   omega-3 fatty acid desaturase, endoplasmic reticulum-like 
 sot-r.1   102596735   omega-3 fatty acid desaturase, endoplasmic reticulum-like 
 sot-r.1   102597672   omega-3 fatty acid desaturase, chloroplastic-like 
 nta-r.1   107763446   omega-3 fatty acid desaturase, endoplasmic reticulum 
 nta-r.1   107777511   omega-3 fatty acid desaturase, endoplasmic reticulum-like 
 nta-r.1   107783156   omega-3 fatty acid desaturase, chloroplastic-like 
 osa-u.5   4351253   fatty acid desaturase DES3 
 osa-u.5   4344389   omega-3 fatty acid desaturase, chloroplastic 
 osa-u.5   4332500   omega-3 fatty acid desaturase, endoplasmic reticulum 
 zma-u.5   100283566   omega-3 fatty acid desaturase 
 zma-u.5   100281245   omega-3 fatty acid desaturase 
 zma-u.5   103644592   omega-3 fatty acid desaturase, chloroplastic 
 tae-r.2   123103230   fatty acid desaturase DES3 
 tae-r.2   543187   omega-3 fatty acid desaturase, chloroplastic 
 tae-r.2   543189   fatty acid desaturase DES3 
 hvu-r.1   123448917   omega-3 fatty acid desaturase, chloroplastic-like 
 hvu-r.1   123448149   fatty acid desaturase DES3-like 
 hvu-r.1   123424595   omega-3 fatty acid desaturase, chloroplastic-like 
 sbi-r.1   8079958   fatty acid desaturase DES3-like 
 sbi-r.1   8084992   temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic 
 bdi-r.1   100824939   fatty acid desaturase DES3 
 bdi-r.1   100831377   omega-3 fatty acid desaturase, chloroplastic 
 bdi-r.1   100840287   omega-3 fatty acid desaturase, chloroplastic 
 cre-r.1   CHLRE_01g038600v5   uncharacterized protein 

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Top 50 coexpressed genes to 107931808 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107931808 (ghi-r.1 coexpression data)

CoexMap"107931808"


ghiLOC107931808 | Entrez gene ID : 107931808    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 2 3 3 2 3 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006636 [list] [network] unsaturated fatty acid biosynthetic process  (6 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (318 genes)  IEA  
GO MF
GO:0042389 [list] [network] omega-3 fatty acid desaturase activity  (6 genes)  IEA  
GO:0016717 [list] [network] oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water  (55 genes)  IEA  
Protein NP_001314267.1 [sequence] [blastp]
XP_040957823.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  E.R. 1,  plas 1,  vacu 1,  cyto_mito 1,  cyto_E.R. 1  (predict for NP_001314267.1)
chlo 6,  mito 1,  E.R. 1,  plas 1,  vacu 1,  cyto_mito 1,  cyto_E.R. 1  (predict for XP_040957823.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001314267.1)
chlo 8  (predict for XP_040957823.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107931808
ghi-r.1
for
121207887
ghi-r.1
for
107956656
ghi-r.1
for
107948941
ath-u.5
for
FAD3
ath-u.5
for
FAD8
ath-u.5
for
FAD7
bra-r.6
for
103864998
bra-r.6
for
103859381
bra-r.6
for
103867994
bna-r.1
for
106452545
bna-r.1
for
111197728
bna-r.1
for
106353041
cit-r.1
for
102611986
cit-r.1
for
102626347
gma-u.5
for
FAD8.2
gma-u.5
for
FAD7-1
gma-u.5
for
FAD8-1
vvi-u.5
for
100260414
vvi-u.5
for
100247097
ppo-u.5
for
7490323
ppo-u.5
for
7494502
ppo-u.5
for
7466077
mtr-u.5
for
11415576
mtr-u.5
for
25490906
mtr-u.5
for
25498767
sly-u.5
for
Fad7
sly-u.5
for
100134915
sot-r.1
for
102597287
sot-r.1
for
102596735
sot-r.1
for
102597672
nta-r.1
for
107763446
nta-r.1
for
107777511
nta-r.1
for
107783156
osa-u.5
for
4351253
osa-u.5
for
4344389
osa-u.5
for
4332500
zma-u.5
for
100283566
zma-u.5
for
100281245
zma-u.5
for
103644592
tae-r.2
for
123103230
tae-r.2
for
543187
tae-r.2
for
543189
hvu-r.1
for
123448917
hvu-r.1
for
123448149
hvu-r.1
for
123424595
sbi-r.1
for
8079958
sbi-r.1
for
8084992
bdi-r.1
for
100824939
bdi-r.1
for
100831377
bdi-r.1
for
100840287
cre-r.1
for
CHLRE_01g038600v5


Ortholog ID: 865
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC121207887 LOC107940880 LOC107958053 FAD3 FAD8 FAD7 LOC103867994 LOC103857278 LOC103850591 LOC111197728 LOC106377255 LOC106380841 LOC102611986 LOC102626347 FAD8.2 FAD3B FAD3-2b LOC100260414 LOC100247097 LOC100243349 LOC7490323 LOC7466077 LOC7468059 LOC11415576 LOC25498767 LOC11411563 Fad7 LOC100134915 LOC102597287 LOC102596735 LOC102597672 LOC107786526 LOC107807128 LOC107832399 LOC4351253 LOC4344389 LOC4349544 LOC100283566 LOC100281245 LOC542222 LOC123085571 LOC123086342 LOC123096668 LOC123448149 LOC123424595 LOC123395843 LOC8084992 LOC8079957 LOC100824939 LOC100831377 LOC100840287 CHLRE_01g038600v5
Function* omega-3 fatty acid desaturase, chloroplastic acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like omega-3 fatty acid desaturase, chloroplastic-like fatty acid desaturase 3 fatty acid desaturase 8 fatty acid desaturase 7 acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic omega-3 fatty acid desaturase, chloroplastic-like omega-3 fatty acid desaturase, endoplasmic reticulum-like temperature-sensitive omega-3 fatty acid desaturase, chloroplastic-like omega-3 fatty acid desaturase, chloroplastic-like acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum-like omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, endoplasmic reticulum omega-3 fatty acid desaturase D omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic acyl-lipid omega-3 desaturase (cytochrome b5), endoplasmic reticulum omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, endoplasmic reticulum omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase omega-3 fatty acid desaturase omega-3 fatty acid desaturase, endoplasmic reticulum-like omega-3 fatty acid desaturase, endoplasmic reticulum-like omega-3 fatty acid desaturase, chloroplastic-like omega-3 fatty acid desaturase, endoplasmic reticulum-like omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic-like fatty acid desaturase DES3 omega-3 fatty acid desaturase, chloroplastic fatty acid desaturase DES3 omega-3 fatty acid desaturase omega-3 fatty acid desaturase fatty acid desaturase 7 omega-3 fatty acid desaturase, chloroplastic fatty acid desaturase DES3 fatty acid desaturase DES3 fatty acid desaturase DES3-like omega-3 fatty acid desaturase, chloroplastic-like fatty acid desaturase DES3-like temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic fatty acid desaturase DES3 fatty acid desaturase DES3 omega-3 fatty acid desaturase, chloroplastic omega-3 fatty acid desaturase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi01200 Carbon metabolism 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath00710 Carbon fixation by Calvin cycle 3
ath01200 Carbon metabolism 3
ath00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit04016 MAPK signaling pathway - plant 2
cit04070 Phosphatidylinositol signaling system 2
cit04626 Plant-pathogen interaction 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
gma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 4
gma00020 Citrate cycle (TCA cycle) 3
gma00270 Cysteine and methionine metabolism 3
gma00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00592 alpha-Linolenic acid metabolism 3
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 4
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
vvi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
ppo00592 alpha-Linolenic acid metabolism 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00260 Glycine, serine and threonine metabolism 4
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr01200 Carbon metabolism 4
mtr00670 One carbon pool by folate 3
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 3
sly01232 Nucleotide metabolism 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 3
sot01320 Sulfur cycle 3
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01250 Biosynthesis of nucleotide sugars 5
osa00520 Amino sugar and nucleotide sugar metabolism 4
osa00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 3
osa04814 Motor proteins 2
osa01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00480 Glutathione metabolism 3
zma00053 Ascorbate and aldarate metabolism 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 7
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 4
bdi01200 Carbon metabolism 4
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01212 Fatty acid metabolism 3
cre01240 Biosynthesis of cofactors 2
cre00061 Fatty acid biosynthesis 2
cre01040 Biosynthesis of unsaturated fatty acids 2
cre00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121207887 107940880 107958053 817548 830441 820288 103867994 103857278 103850591 111197728 106377255 106380841 102611986 102626347 100799517 100037456 732540 100260414 100247097 100243349 7490323 7466077 7468059 11415576 25498767 11411563 544203 100134915 102597287 102596735 102597672 107786526 107807128 107832399 4351253 4344389 4349544 100283566 100281245 542222 123085571 123086342 123096668 123448149 123424595 123395843 8084992 8079957 100824939 100831377 100840287 5715517
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