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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107932660   uncharacterized LOC107932660 
 ghi-r.1   107947452   uncharacterized LOC107947452 
 ath-u.5   EMB1303   embryo defective 1303 
 bra-r.6   103835209   protein YELLOW LEAF 1, choloroplastic 
 bra-r.6   103828805   protein YELLOW LEAF 1, choloroplastic 
 bna-r.1   111199208   protein YELLOW LEAF 1, choloroplastic-like 
 bna-r.1   106451278   protein YELLOW LEAF 1, choloroplastic-like 
 bna-r.1   BNAC03G59750D   protein YELLOW LEAF 1, choloroplastic 
 cit-r.1   102623881   protein FERTILITY RESTORER RF2, mitochondrial-like 
 cit-r.1   102614333   hypothetical protein 
 gma-u.5   100306022   uncharacterized LOC100306022 
 gma-u.5   100817121   protein YELLOW LEAF 1, choloroplastic 
 vvi-u.5   100244627   protein FERTILITY RESTORER RF2, mitochondrial 
 ppo-u.5   7487562   protein YELLOW LEAF 1, choloroplastic 
 ppo-u.5   18103522   protein YELLOW LEAF 1, choloroplastic 
 mtr-u.5   25490736   protein FERTILITY RESTORER RF2, mitochondrial 
 sly-u.5   101257880   protein YELLOW LEAF 1, choloroplastic-like 
 sly-u.5   101255489   protein YELLOW LEAF 1, choloroplastic 
 sot-r.1   102588854   uncharacterized LOC102588854 
 sot-r.1   102600615   uncharacterized LOC102600615 
 nta-r.1   107804991   uncharacterized LOC107804991 
 nta-r.1   107820657   uncharacterized LOC107820657 
 nta-r.1   107818890   uncharacterized LOC107818890 

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Top 50 coexpressed genes to 107932660 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107932660 (ghi-r.1 coexpression data)

CoexMap"107932668"


ghiLOC107932668 | Entrez gene ID : 107932668    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 2 1 2 3 2 2 1 2 1 2 2 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (41 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (180 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO MF
Protein XP_016720213.2 [sequence] [blastp]
XP_016720214.2 [sequence] [blastp]
XP_016720215.2 [sequence] [blastp]
XP_016720216.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4,  cyto_nucl 2  (predict for XP_016720213.2)
chlo 6,  nucl 4,  cyto_nucl 2  (predict for XP_016720214.2)
chlo 6,  nucl 4  (predict for XP_016720215.2)
chlo 6,  nucl 4  (predict for XP_016720216.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016720213.2)
chlo 8  (predict for XP_016720214.2)
chlo 8  (predict for XP_016720215.2)
chlo 8  (predict for XP_016720216.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107932660
ghi-r.1
for
107947452
ath-u.5
for
EMB1303
bra-r.6
for
103835209
bra-r.6
for
103828805
bna-r.1
for
111199208
bna-r.1
for
106451278
bna-r.1
for
BNAC03G59750D
cit-r.1
for
102623881
cit-r.1
for
102614333
gma-u.5
for
100306022
gma-u.5
for
100817121
vvi-u.5
for
100244627
ppo-u.5
for
7487562
ppo-u.5
for
18103522
mtr-u.5
for
25490736
sly-u.5
for
101257880
sly-u.5
for
101255489
sot-r.1
for
102588854
sot-r.1
for
102600615
nta-r.1
for
107804991
nta-r.1
for
107820657
nta-r.1
for
107818890


Ortholog ID: 6734
Species ghi ghi ath bra bra bna bna bna cit cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta
Symbol LOC107932660 LOC107947452 EMB1303 LOC103835209 LOC103828805 LOC106451278 BNAC03G59750D LOC106436400 LOC102623881 LOC102614333 LOC100306022 LOC100817121 LOC100244627 LOC7487562 LOC18103522 LOC25490736 LOC101257880 LOC101255489 LOC102588854 LOC102600615 LOC107804991 LOC107820657 LOC107818890
Function* uncharacterized LOC107932660 uncharacterized LOC107947452 embryo defective 1303 protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic-like protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial-like hypothetical protein uncharacterized LOC100306022 protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial protein YELLOW LEAF 1, choloroplastic-like protein YELLOW LEAF 1, choloroplastic uncharacterized LOC102588854 uncharacterized LOC102600615 uncharacterized LOC107804991 uncharacterized LOC107820657 uncharacterized LOC107818890
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath03083 Polycomb repressive complex 2
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04120 Ubiquitin mediated proteolysis 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 8
cit03040 Spliceosome 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03060 Protein export 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107932660 107947452 842073 103835209 103828805 106451278 106439711 106436400 102623881 102614333 100306022 100817121 100244627 7487562 18103522 25490736 101257880 101255489 102588854 102600615 107804991 107820657 107818890
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