Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107933502   structure-specific endonuclease subunit SLX1 
 ghi-r.1   107938429   uncharacterized LOC107938429 
 ghi-r.1   121227682   uncharacterized LOC121227682 
 ghi-r.1   121226477   uncharacterized LOC121226477 
 ath-u.5   AT2G30350   Excinuclease ABC, C subunit, N-terminal 
 bra-r.6   103857310   structure-specific endonuclease subunit slx1 
 bra-r.6   103865032   uncharacterized LOC103865032 
 bna-r.1   106348406   uncharacterized LOC106348406 
 bna-r.1   106437594   structure-specific endonuclease subunit slx1 
 cit-r.1   102631105   uncharacterized LOC102631105 
 gma-u.5   100801307   uncharacterized LOC100801307 
 gma-u.5   100788794   GIY-YIG DNA endonuclease 
 vvi-u.5   100250139   uncharacterized LOC100250139 
 ppo-u.5   7498130   uncharacterized LOC7498130 
 ppo-u.5   7465170   uncharacterized LOC7465170 
 mtr-u.5   25491033   structure-specific endonuclease subunit SLX1 homolog 
 sly-u.5   101267927   GIY-YIG DNA endonuclease 
 sot-r.1   102597488   structure-specific endonuclease subunit SLX1 
 nta-r.1   107791600   uncharacterized LOC107791600 
 nta-r.1   107794364   uncharacterized LOC107794364 
 osa-u.5   4342773   uncharacterized LOC4342773 
 zma-u.5   100193415   uncharacterized LOC100193415 
 sbi-r.1   8078461   uncharacterized LOC8078461 
 bdi-r.1   100832723   uncharacterized LOC100832723 
 cre-r.1   CHLRE_07g351500v5   uncharacterized protein 

close


Top 50 coexpressed genes to 107933502 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107933502 (ghi-r.1 coexpression data)

CoexMap"107933502"


ghiLOC107933502 | Entrez gene ID : 107933502    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma sbi bdi cre hvu tae
Paralog 4 1 2 2 1 2 1 2 1 1 1 2 1 1 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03460 [list] [network] Fanconi anemia pathway (91 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (150 genes)  IEA  
GO CC
GO:0033557 [list] [network] Slx1-Slx4 complex  (7 genes)  IEA  
GO MF
GO:0008821 [list] [network] crossover junction DNA endonuclease activity  (13 genes)  IEA  
GO:0017108 [list] [network] 5'-flap endonuclease activity  (29 genes)  IEA  
Protein XP_016721215.2 [sequence] [blastp]
XP_016721216.2 [sequence] [blastp]
XP_040947479.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016721215.2)
nucl 9  (predict for XP_016721216.2)
nucl 9,  cyto 1  (predict for XP_040947479.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016721215.2)
other 8  (predict for XP_016721216.2)
other 8  (predict for XP_040947479.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107933502
ghi-r.1
for
107938429
ghi-r.1
for
121227682
ghi-r.1
for
121226477
ath-u.5
for
AT2G30350
bra-r.6
for
103857310
bra-r.6
for
103865032
bna-r.1
for
106348406
bna-r.1
for
106437594
cit-r.1
for
102631105
gma-u.5
for
100801307
gma-u.5
for
100788794
vvi-u.5
for
100250139
ppo-u.5
for
7498130
ppo-u.5
for
7465170
mtr-u.5
for
25491033
sly-u.5
for
101267927
sot-r.1
for
102597488
nta-r.1
for
107791600
nta-r.1
for
107794364
osa-u.5
for
4342773
zma-u.5
for
100193415
sbi-r.1
for
8078461
bdi-r.1
for
100832723
cre-r.1
for
CHLRE_07g351500v5


Ortholog ID: 5476
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma sbi bdi cre
Symbol LOC107933502 LOC107938429 LOC107938081 AT2G30350 LOC103857310 LOC103865032 LOC106348406 LOC106387876 LOC106364737 LOC102631105 LOC100801307 LOC100788794 LOC100250139 LOC7498130 LOC7465170 LOC25491033 LOC101267927 LOC102597488 LOC107791600 LOC107794364 LOC4342773 LOC100193415 LOC8078461 LOC100832723 CHLRE_07g351500v5
Function* structure-specific endonuclease subunit SLX1 uncharacterized LOC107938429 structure-specific endonuclease subunit slx1 Excinuclease ABC, C subunit, N-terminal structure-specific endonuclease subunit slx1 uncharacterized LOC103865032 uncharacterized LOC106348406 uncharacterized LOC106387876 uncharacterized LOC106364737 uncharacterized LOC102631105 uncharacterized LOC100801307 GIY-YIG DNA endonuclease uncharacterized LOC100250139 uncharacterized LOC7498130 uncharacterized LOC7465170 structure-specific endonuclease subunit SLX1 homolog GIY-YIG DNA endonuclease structure-specific endonuclease subunit SLX1 uncharacterized LOC107791600 uncharacterized LOC107794364 uncharacterized LOC4342773 uncharacterized LOC100193415 uncharacterized LOC8078461 uncharacterized LOC100832723 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 4
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo04142 Lysosome 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr01240 Biosynthesis of cofactors 2
mtr00910 Nitrogen metabolism 2
mtr01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
nta01250 Biosynthesis of nucleotide sugars 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 6
zma03008 Ribosome biogenesis in eukaryotes 3
zma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 3
bdi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107933502 107938429 107938081 817585 103857310 103865032 106348406 106387876 106364737 102631105 100801307 100788794 100250139 7498130 7465170 25491033 101267927 102597488 107791600 107794364 4342773 100193415 8078461 100832723 5718190
The preparation time of this page was 0.2 [sec].