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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107934005   E3 ubiquitin-protein ligase SDIR1 
 ath-u.5   SDIR1   RING/U-box superfamily protein 
 gma-u.5   100816448   E3 ubiquitin-protein ligase SDIR1-like 
 gma-u.5   100805406   E3 ubiquitin-protein ligase SDIR1-like 
 gma-u.5   100777936   E3 ubiquitin-protein ligase SDIR1-like 
 vvi-u.5   100260437   E3 ubiquitin-protein ligase SDIR1 
 vvi-u.5   100246103   E3 ubiquitin-protein ligase SDIR1 
 ppo-u.5   7490386   E3 ubiquitin-protein ligase SDIR1 
 ppo-u.5   7481521   E3 ubiquitin-protein ligase SDIR1 
 mtr-u.5   25489323   E3 ubiquitin-protein ligase SDIR1 
 mtr-u.5   25489321   E3 ubiquitin-protein ligase SDIR1 
 mtr-u.5   11414877   E3 ubiquitin-protein ligase SDIR1 
 sly-u.5   101256289   E3 ubiquitin-protein ligase SDIR1-like 
 osa-u.5   4332396   E3 ubiquitin-protein ligase SDIR1 
 zma-u.5   100193208   uncharacterized LOC100193208 
 zma-u.5   100280655   uncharacterized LOC100280655 

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Top 50 coexpressed genes to 107934005 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107934005 (ghi-r.1 coexpression data)

CoexMap"107934005"


ghiLOC107934005 | Entrez gene ID : 107934005    
Species ghi ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit bna bdi sbi cre
Paralog 1 1 3 2 2 3 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (782 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
Protein XP_016721991.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  plas 1,  cyto_plas 1,  cyto 1,  mito 1,  extr 1,  vacu 1,  cysk 1  (predict for XP_016721991.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016721991.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107934005

.
ath-u.5
for
SDIR1

.
gma-u.5
for
100816448

.
gma-u.5
for
100805406

.
gma-u.5
for
100777936

.
vvi-u.5
for
100260437

.
vvi-u.5
for
100246103

.
ppo-u.5
for
7490386

.
ppo-u.5
for
7481521

.
mtr-u.5
for
25489323

.
mtr-u.5
for
25489321

.
mtr-u.5
for
11414877

.
sly-u.5
for
101256289

.
osa-u.5
for
4332396

.
zma-u.5
for
100193208

.
zma-u.5
for
100280655

.


Ortholog ID: 4752
Species ath gma gma sly osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol SDIR1 LOC100805406 LOC100816448 LOC101256289 LOC4332396 LOC100280655 LOC100193208 LOC103841466 LOC100260437 LOC100246103 LOC7490386 LOC7481521 LOC11414877 LOC25489321 LOC100682520 LOC123097917 LOC123449030 LOC107942453 LOC107934005 LOC106360775 LOC106415820 CHLRE_12g501450v5 LOC8081512 LOC102586421 LOC102598078 LOC102624351 LOC102628476 LOC100833926 LOC107802917 LOC107795035
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase SDIR1-like E3 ubiquitin-protein ligase SDIR1-like E3 ubiquitin-protein ligase SDIR1-like E3 ubiquitin-protein ligase SDIR1 uncharacterized LOC100280655 uncharacterized LOC100193208 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 uncharacterized protein E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1-like E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1-like E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1 E3 ubiquitin-protein ligase SDIR1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00480 Glutathione metabolism 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 3
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03040 Spliceosome 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03040 Spliceosome 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 3
sot01200 Carbon metabolism 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot00010 Glycolysis / Gluconeogenesis 2
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04130 SNARE interactions in vesicular transport 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824718 100805406 100816448 101256289 4332396 100280655 100193208 103841466 100260437 100246103 7490386 7481521 11414877 25489321 100682520 123097917 123449030 107942453 107934005 106360775 106415820 5716395 8081512 102586421 102598078 102624351 102628476 100833926 107802917 107795035
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