ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107934794	leucoanthocyanidin reductase
ghi-r.1	121224433	leucoanthocyanidin reductase
ghi-r.1	107908787	probable pinoresinol-lariciresinol reductase 3
ghi-r.1	107900663	bifunctional pinoresinol-lariciresinol reductase 2
ath-u.5	AT1G75280	NmrA-like negative transcriptional regulator family protein
bra-r.6	103872762	isoflavone reductase homolog P3
bra-r.6	103868905	pinoresinol reductase 1
bna-r.1	106354506	isoflavone reductase homolog P3
bna-r.1	106361499	phenylcoumaran benzylic ether reductase 1
cit-r.1	102606683	phenylcoumaran benzylic ether reductase POP1-like
cit-r.1	127901346	eugenol synthase 1-like
gma-u.5	100786578	pinoresinol reductase 1-like
gma-u.5	LAR1	leucoanthocyanidin reductase
vvi-u.5	IFRL6	isoflavone reductase-like protein 6
vvi-u.5	IFRL4	isoflavone reductase-like protein 4
vvi-u.5	100267485	probable pinoresinol-lariciresinol reductase 3
ppo-u.5	7456368	phenylcoumaran benzylic ether reductase POP1-like
ppo-u.5	18094088	bifunctional pinoresinol-lariciresinol reductase 2
ppo-u.5	7479737	phenylcoumaran benzylic ether reductase Betv6
mtr-u.5	11411102	isoflavone reductase homolog
mtr-u.5	11410516	eugenol synthase 1
mtr-u.5	11410258	probable pinoresinol-lariciresinol reductase 3
sly-u.5	101265178	isoflavone reductase homolog
sly-u.5	101264213	eugenol synthase 1
sly-u.5	101259550	bifunctional pinoresinol-lariciresinol reductase
sot-r.1	102596386	isoflavone reductase-like protein
sot-r.1	102586494	isoflavone reductase homolog
sot-r.1	102597564	bifunctional pinoresinol-lariciresinol reductase 2-like
nta-r.1	107809306	phenylcoumaran benzylic ether reductase TP7-like
nta-r.1	107807959	isoflavone reductase homolog A622-like
osa-u.5	4351932	isoflavone reductase homolog
osa-u.5	4326355	isoflavone reductase homolog IRL
zma-u.5	542717	isoflavone reductase-like 1
zma-u.5	103650598	isoflavone reductase homolog
zma-u.5	103644139	isoflavone reductase homolog A622-like
tae-r.2	123051405	isoflavone reductase homolog
tae-r.2	123051402	isoflavone reductase homolog
tae-r.2	123043540	isoflavone reductase homolog
hvu-r.1	123401120	probable pinoresinol-lariciresinol reductase 3
hvu-r.1	123410010	phenylcoumaran benzylic ether reductase Pyrc5-like
sbi-r.1	110429729	isoflavone reductase homolog
sbi-r.1	110429730	isoflavone reductase homolog
sbi-r.1	8079094	isoflavone reductase homolog IRL
bdi-r.1	100821928	probable pinoresinol-lariciresinol reductase 3
bdi-r.1	100842184	isoflavone reductase homolog
bdi-r.1	100844909	isoflavone reductase homolog PCBER
cre-r.1	CHLRE_11g477200v5	uncharacterized protein

Top 50 coexpressed genes to 107934794 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107934794 (ghi-r.1 coexpression data)

CoexMap"107934794"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00941 [list] [network] Flavonoid biosynthesis (111 genes)

GO BP

GO CC

GO MF

GO:0016491 [list] [network] oxidoreductase activity

(3258 genes)

IEA

Protein

XP_016722788.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 3, extr 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_016722788.1)

Subcellular
localization
TargetP

mito 5

(predict for XP_016722788.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107934794	ghi-r.1 for 121224433	ghi-r.1 for 107908787	ghi-r.1 for 107900663	ath-u.5 for AT1G75280	bra-r.6 for 103872762	bra-r.6 for 103868905	bna-r.1 for 106354506	bna-r.1 for 106361499	cit-r.1 for 102606683	cit-r.1 for 127901346	gma-u.5 for 100786578	gma-u.5 for LAR1	vvi-u.5 for IFRL6	vvi-u.5 for IFRL4	vvi-u.5 for 100267485	ppo-u.5 for 7456368	ppo-u.5 for 18094088	ppo-u.5 for 7479737	mtr-u.5 for 11411102	mtr-u.5 for 11410516	mtr-u.5 for 11410258	sly-u.5 for 101265178	sly-u.5 for 101264213	sly-u.5 for 101259550	sot-r.1 for 102596386	sot-r.1 for 102586494	sot-r.1 for 102597564	nta-r.1 for 107809306	nta-r.1 for 107807959	osa-u.5 for 4351932	osa-u.5 for 4326355	zma-u.5 for 542717	zma-u.5 for 103650598	zma-u.5 for 103644139	tae-r.2 for 123051405	tae-r.2 for 123051402	tae-r.2 for 123043540	hvu-r.1 for 123401120	hvu-r.1 for 123410010	sbi-r.1 for 110429729	sbi-r.1 for 110429730	sbi-r.1 for 8079094	bdi-r.1 for 100821928	bdi-r.1 for 100842184	bdi-r.1 for 100844909	cre-r.1 for CHLRE_11g477200v5

Ortholog

Ortholog ID: 129

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

IFR

IFRL4

LAR1

Function^*

translation initiation factor IF-2

eugenol synthase 1

isoflavone reductase homolog

NmrA-like negative transcriptional regulator family protein

isoflavone reductase homolog P3

isoflavone reductase homolog P3-like

probable pinoresinol-lariciresinol reductase 3

phenylcoumaran benzylic ether reductase Pyrc5-like

phenylcoumaran benzylic ether reductase TP7-like

phenylcoumaran benzylic ether reductase Pyrc5

isoflavone reductase

NmrA-like family domain-containing protein

isoflavone reductase-like protein 4

leucoanthocyanidin reductase 1

bifunctional pinoresinol-lariciresinol reductase 2

isoflavone reductase homolog

probable pinoresinol-lariciresinol reductase 3

phenylcoumaran benzylic ether reductase Betv6

isoflavone reductase homolog

bifunctional pinoresinol-lariciresinol reductase

isoflavone reductase homolog

probable pinoresinol-lariciresinol reductase 3

phenylcoumaran benzylic ether reductase TP7-like

isoflavone reductase homolog

phenylcoumaran benzylic ether reductase TP7-like

isoflavone reductase homolog IRL

isoflavone reductase homolog

isoflavone reductase homolog IRL-like

uncharacterized LOC100280127

isoflavone reductase homolog

isoflavone reductase homolog IRL

probable pinoresinol-lariciresinol reductase 3

phenylcoumaran benzylic ether reductase Pyrc5-like

isoflavone reductase homolog

phenylcoumaran benzylic ether reductase Pyrc5-like

isoflavone reductase homolog

isoflavone reductase homolog IRL

isoflavone reductase homolog PCBER

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	12
ghi00380	Tryptophan metabolism	4
ghi00360	Phenylalanine metabolism	2
ghi00051	Fructose and mannose metabolism	2
ghi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00920	Sulfur metabolism	4
ath01320	Sulfur cycle	3
ath00270	Cysteine and methionine metabolism	3
ath01200	Carbon metabolism	3
ath01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	2
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	2
cit00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00480	Glutathione metabolism	4
cit00270	Cysteine and methionine metabolism	3
cit01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	8
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00941	Flavonoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	4
ppo01240	Biosynthesis of cofactors	3
ppo00710	Carbon fixation by Calvin cycle	3
ppo01230	Biosynthesis of amino acids	3
ppo00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	2
mtr00052	Galactose metabolism	2
mtr00561	Glycerolipid metabolism	2
mtr00600	Sphingolipid metabolism	2
mtr00603	Glycosphingolipid biosynthesis - globo and isoglobo series	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00920	Sulfur metabolism	4
sly01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	3
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00920	Sulfur metabolism	6
nta01320	Sulfur cycle	6
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00480	Glutathione metabolism	3
osa00270	Cysteine and methionine metabolism	3
osa00920	Sulfur metabolism	2
osa01200	Carbon metabolism	2
osa01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu00071	Fatty acid degradation	2
hvu01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00999	Biosynthesis of various plant secondary metabolites	2
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	8
sbi00360	Phenylalanine metabolism	6
sbi00270	Cysteine and methionine metabolism	2
sbi00670	One carbon pool by folate	2
sbi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	3
bdi01240	Biosynthesis of cofactors	2
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi00260	Glycine, serine and threonine metabolism	2
bdi00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00480	Glutathione metabolism	3
cre00590	Arachidonic acid metabolism	2
cre00053	Ascorbate and aldarate metabolism	2
cre04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

107910193

107934993

107929415

843865

103831986

103852943

106406400

125594896

125580548

102622214

102625829

102623022

100781316

100781863

100264250

100232982

18094088

18094089

11410258

25490200

25490199

101265178

101259550

101265488

102587168

102596870

107809306

107800585

142170633

4326149

4326148

103650598

103635019

100280127

123170562

123182113

123145218

123410010

123412051

123439699

110429729

110429730

8085043

100844909

66055322

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	2	2	2	3	3	3	3	3	2	2	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107934794 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107934794 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**