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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107937437   vesicle-associated protein 1-2 
 ath-u.5   VAP27-2   vamp/synaptobrevin-associated protein 27-2 
 ath-u.5   AT1G51270   vesicle-associated protein 1-4 
 ath-u.5   AT5G47180   Plant VAMP (vesicle-associated membrane protein) family protein 
 gma-u.5   100794670   vesicle-associated protein 2-2-like 
 gma-u.5   100798247   vesicle-associated protein 1-2 
 gma-u.5   100801987   vesicle-associated protein 2-2-like 
 vvi-u.5   100253999   vesicle-associated protein 1-1 
 vvi-u.5   100247810   vesicle-associated protein 1-2 
 ppo-u.5   7473901   vesicle-associated protein 1-2 
 ppo-u.5   18105191   vesicle-associated protein 1-2 
 ppo-u.5   18094564   vesicle-associated protein 1-2 
 mtr-u.5   11428421   vesicle-associated protein 2-1 
 mtr-u.5   11426935   vesicle-associated protein 1-2 
 sly-u.5   101245870   vesicle-associated protein 2-1 
 sly-u.5   101245885   vesicle-associated membrane protein 
 sly-u.5   101248682   vesicle-associated protein 1-1 
 osa-u.5   4349070   vesicle-associated protein 1-2 
 osa-u.5   9270104   vesicle-associated protein 2-1 
 osa-u.5   4326527   vesicle-associated protein 2-2 
 zma-u.5   100280363   uncharacterized LOC100280363 
 zma-u.5   100281331   uncharacterized LOC100281331 
 zma-u.5   100304272   Vesicle-associated protein 2-1 

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Top 50 coexpressed genes to 107937437 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107937437 (ghi-r.1 coexpression data)

CoexMap"107937437"


ghiLOC107937437 | Entrez gene ID : 107937437    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 2 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0061817 [list] [network] endoplasmic reticulum-plasma membrane tethering  (37 genes)  IEA  
GO:0090158 [list] [network] endoplasmic reticulum membrane organization  (50 genes)  IEA  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (634 genes)  IEA  
GO:0005886 [list] [network] plasma membrane  (2553 genes)  IEA  
GO MF
Protein XP_016725799.2 [sequence] [blastp]
XP_040955491.1 [sequence] [blastp]
XP_040955492.1 [sequence] [blastp]
XP_040955493.1 [sequence] [blastp]
XP_040955494.1 [sequence] [blastp]
XP_040955495.1 [sequence] [blastp]
XP_040955496.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  cyto 1,  vacu 1,  golg 1,  nucl 1,  extr 1,  E.R. 1,  cyto_pero 1  (predict for XP_016725799.2)
plas 4,  cyto 1,  vacu 1,  golg 1,  nucl 1,  extr 1,  E.R. 1,  cyto_pero 1  (predict for XP_040955491.1)
plas 4,  cyto 1,  vacu 1,  golg 1,  nucl 1,  extr 1,  E.R. 1,  cyto_pero 1  (predict for XP_040955492.1)
plas 4,  cyto 1,  vacu 1,  golg 1,  nucl 1,  extr 1,  E.R. 1,  cyto_pero 1  (predict for XP_040955493.1)
plas 4,  vacu 1,  golg 1,  chlo 1,  nucl 1,  cyto 1,  extr 1,  pero 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_pero 1  (predict for XP_040955494.1)
plas 4,  vacu 1,  golg 1,  chlo 1,  nucl 1,  cyto 1,  extr 1,  pero 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_pero 1  (predict for XP_040955495.1)
plas 4,  vacu 1,  golg 1,  chlo 1,  nucl 1,  cyto 1,  extr 1,  pero 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_pero 1  (predict for XP_040955496.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016725799.2)
other 7  (predict for XP_040955491.1)
other 7  (predict for XP_040955492.1)
other 7  (predict for XP_040955493.1)
other 7  (predict for XP_040955494.1)
other 7  (predict for XP_040955495.1)
other 7  (predict for XP_040955496.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107937437
ath-u.5
for
VAP27-2
ath-u.5
for
AT1G51270
ath-u.5
for
AT5G47180
gma-u.5
for
100794670
gma-u.5
for
100798247
gma-u.5
for
100801987
vvi-u.5
for
100253999
vvi-u.5
for
100247810
ppo-u.5
for
7473901
ppo-u.5
for
18105191
ppo-u.5
for
18094564
mtr-u.5
for
11428421
mtr-u.5
for
11426935
sly-u.5
for
101245870
sly-u.5
for
101245885
sly-u.5
for
101248682
osa-u.5
for
4349070
osa-u.5
for
9270104
osa-u.5
for
4326527
zma-u.5
for
100280363
zma-u.5
for
100281331
zma-u.5
for
100304272


Ortholog ID: 149
Species ghi ghi ath bra bra bna bna cit cit gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma tae tae hvu sbi sbi bdi bdi cre
Symbol LOC107886082 LOC107891989 VAP27-2 LOC103843379 LOC103839543 LOC106416681 LOC111215152 LOC102611975 LOC102630951 LOC100798247 LOC100247810 LOC100253999 LOC7453954 LOC7471620 LOC11424030 LOC101251624 LOC101264447 LOC102594610 LOC102583399 LOC107782406 LOC107787792 LOC9270104 LOC112936046 LOC100217097 LOC123144974 LOC123189780 LOC123427348 LOC8062286 LOC8077921 LOC100841035 LOC100821088 CHLRE_03g196900v5
Function* vesicle-associated protein 1-2 vesicle-associated protein 2-2 vamp/synaptobrevin-associated protein 27-2 vesicle-associated protein 2-2 vesicle-associated protein 2-1 vesicle-associated protein 2-1 vesicle-associated protein 1-1-like vesicle-associated protein 1-2 vesicle-associated protein 2-1 vesicle-associated protein 1-2 vesicle-associated protein 1-2 vesicle-associated protein 1-1 vesicle-associated protein 1-2 vesicle-associated protein 1-2 vesicle-associated protein 1-2 vesicle-associated protein 2-2 vesicle-associated protein 1-1-like vesicle-associated protein 2-1 vesicle-associated protein 1-1-like vesicle-associated protein 2-1-like vesicle-associated protein 2-1 vesicle-associated protein 2-1 vesicle-associated protein 1-3 uncharacterized LOC100217097 vesicle-associated protein 2-1 vesicle-associated protein 1-2 vesicle-associated protein 1-2-like vesicle-associated protein 1-1 vesicle-associated protein 2-2 vesicle-associated protein 2-1 vesicle-associated protein 2-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00100 Steroid biosynthesis 2
ghi04144 Endocytosis 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03022 Basal transcription factors 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
bra04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 3
bna01040 Biosynthesis of unsaturated fatty acids 3
bna01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00620 Pyruvate metabolism 7
gma01200 Carbon metabolism 7
gma00640 Propanoate metabolism 5
gma00061 Fatty acid biosynthesis 4
gma01212 Fatty acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 5
vvi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta00100 Steroid biosynthesis 4
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta00330 Arginine and proline metabolism 2
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 4
tae04148 Efferocytosis 4
tae04517 IgSF CAM signaling 4
tae04518 Integrin signaling 4
tae04620 Toll-like receptor signaling pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 11
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04148 Efferocytosis 2
bdi00564 Glycerophospholipid metabolism 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 3
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107886082 107891989 837404 103843379 103839543 106416681 111215152 102611975 102630951 100798247 100247810 100253999 7453954 7471620 11424030 101251624 101264447 102594610 102583399 107782406 107787792 9270104 112936046 100217097 123144974 123189780 123427348 8062286 8077921 100841035 100821088 5718770
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