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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107938440   uncharacterized LOC107938440 
 ghi-r.1   107916537   probable glucan 1,3-beta-glucosidase D 
 ath-u.5   AT3G19650   cyclin-like protein 
 bra-r.6   103869434   bcl-2-associated transcription factor 1 
 bna-r.1   106425160   U1 small nuclear ribonucleoprotein 70 kDa 
 bna-r.1   106411562   translation initiation factor IF-2 
 bna-r.1   125608866   U1 small nuclear ribonucleoprotein 70 kDa-like 
 cit-r.1   102607092   uncharacterized LOC102607092 
 gma-u.5   100819584   bcl-2-associated transcription factor 1 
 gma-u.5   100802891   uncharacterized LOC100802891 
 gma-u.5   100781867   bcl-2-associated transcription factor 1 
 vvi-u.5   100263484   uncharacterized LOC100263484 
 ppo-u.5   7469634   uncharacterized LOC7469634 
 mtr-u.5   25485347   uncharacterized LOC25485347 
 sly-u.5   101264258   uncharacterized LOC101264258 
 sot-r.1   102584382   protein CASC3 
 nta-r.1   107820464   uncharacterized LOC107820464 
 nta-r.1   107785264   uncharacterized LOC107785264 
 osa-u.5   4331981   uncharacterized LOC4331981 
 zma-u.5   100283482   somatic embryogenesis related protein 
 tae-r.2   123093086   splicing factor U2af large subunit A-like 
 tae-r.2   123084989   eukaryotic translation initiation factor 3 subunit A 
 tae-r.2   123098357   uncharacterized protein DDB_G0283697 
 hvu-r.1   123449398   eukaryotic translation initiation factor 3 subunit A 
 sbi-r.1   8054232   pre-mRNA-splicing factor cwc25 
 bdi-r.1   100833545   filaggrin 

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Top 50 coexpressed genes to 107938440 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107938440 (ghi-r.1 coexpression data)

CoexMap"107938440"


ghiLOC107938440 | Entrez gene ID : 107938440    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 3 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006397 [list] [network] mRNA processing  (513 genes)  IEA  
GO CC
GO:0035145 [list] [network] exon-exon junction complex  (26 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_016727101.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016727101.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_016727101.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107938440
ghi-r.1
for
107916537
ath-u.5
for
AT3G19650
bra-r.6
for
103869434
bna-r.1
for
106425160
bna-r.1
for
106411562
bna-r.1
for
125608866
cit-r.1
for
102607092
gma-u.5
for
100819584
gma-u.5
for
100802891
gma-u.5
for
100781867
vvi-u.5
for
100263484
ppo-u.5
for
7469634
mtr-u.5
for
25485347
sly-u.5
for
101264258
sot-r.1
for
102584382
nta-r.1
for
107820464
nta-r.1
for
107785264
osa-u.5
for
4331981
zma-u.5
for
100283482
tae-r.2
for
123093086
tae-r.2
for
123084989
tae-r.2
for
123098357
hvu-r.1
for
123449398
sbi-r.1
for
8054232
bdi-r.1
for
100833545


Ortholog ID: 8021
Species ghi ghi ath bra bna bna bna cit gma gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107938440 LOC107916537 AT3G19650 LOC103869434 LOC106425160 LOC106411562 LOC125608866 LOC102607092 LOC100819584 LOC100802891 LOC100781867 LOC100263484 LOC7469634 LOC25485347 LOC101264258 LOC102584382 LOC107820464 LOC107785264 LOC4331981 LOC100283482 LOC123093086 LOC123084989 LOC123098357 LOC123449398 LOC8054232 LOC100833545
Function* uncharacterized LOC107938440 probable glucan 1,3-beta-glucosidase D cyclin-like protein bcl-2-associated transcription factor 1 U1 small nuclear ribonucleoprotein 70 kDa translation initiation factor IF-2 U1 small nuclear ribonucleoprotein 70 kDa-like uncharacterized LOC102607092 bcl-2-associated transcription factor 1 uncharacterized LOC100802891 bcl-2-associated transcription factor 1 uncharacterized LOC100263484 uncharacterized LOC7469634 uncharacterized LOC25485347 uncharacterized LOC101264258 protein CASC3 uncharacterized LOC107820464 uncharacterized LOC107785264 uncharacterized LOC4331981 somatic embryogenesis related protein splicing factor U2af large subunit A-like eukaryotic translation initiation factor 3 subunit A uncharacterized protein DDB_G0283697 eukaryotic translation initiation factor 3 subunit A pre-mRNA-splicing factor cwc25 filaggrin
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta03022 Basal transcription factors 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107938440 107916537 821502 103869434 106425160 106411562 125608866 102607092 100819584 100802891 100781867 100263484 7469634 25485347 101264258 102584382 107820464 107785264 4331981 100283482 123093086 123084989 123098357 123449398 8054232 100833545
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