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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107951030   splicing factor U2af small subunit B 
 ghi-r.1   107936496   splicing factor U2af small subunit B 
 ghi-r.1   107891645   splicing factor U2af small subunit B 
 ath-u.5   U2AF35B   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 ath-u.5   ATU2AF35A   U2 snRNP auxiliary factor small subunit 
 bra-r.6   103829051   splicing factor U2af small subunit A-like 
 bra-r.6   103839277   splicing factor U2af small subunit B 
 bra-r.6   103835383   splicing factor U2af small subunit A 
 bna-r.1   106425342   splicing factor U2af small subunit A 
 bna-r.1   106447072   splicing factor U2af small subunit B 
 bna-r.1   106367911   splicing factor U2af small subunit A-like 
 cit-r.1   102616318   splicing factor U2af small subunit B-like 
 cit-r.1   102615618   splicing factor U2af small subunit B 
 cit-r.1   102631146   splicing factor U2af small subunit B-like 
 gma-u.5   100783847   splicing factor U2af small subunit B 
 gma-u.5   100794975   splicing factor U2af small subunit B 
 gma-u.5   100799606   splicing factor U2af small subunit B 
 vvi-u.5   100247727   splicing factor U2af small subunit B 
 vvi-u.5   100266834   splicing factor U2af small subunit B 
 ppo-u.5   7494732   splicing factor U2af small subunit B 
 ppo-u.5   18100077   splicing factor U2af small subunit B 
 ppo-u.5   18097994   splicing factor U2af small subunit B 
 mtr-u.5   25487504   splicing factor U2af small subunit B 
 mtr-u.5   25499390   splicing factor U2af small subunit B 
 sly-u.5   101245917   splicing factor U2af small subunit B 
 sly-u.5   101263952   splicing factor U2af small subunit B 
 sot-r.1   102590524   splicing factor U2af small subunit B-like 
 sot-r.1   102596690   splicing factor U2af small subunit B-like 
 nta-r.1   107810075   splicing factor U2af small subunit B 
 nta-r.1   107789911   splicing factor U2af small subunit B-like 
 nta-r.1   107775509   splicing factor U2af small subunit B 
 osa-u.5   4339621   splicing factor U2af small subunit B 
 osa-u.5   9268567   splicing factor U2af small subunit A-like 
 zma-u.5   100272749   uncharacterized LOC100272749 
 zma-u.5   100284238   splicing factor U2af 38 kDa subunit 
 zma-u.5   100191858   splicing factor U2af subunit 
 tae-r.2   123068262   splicing factor U2af small subunit B 
 tae-r.2   123070314   splicing factor U2af small subunit B 
 tae-r.2   123104186   splicing factor U2af small subunit A 
 hvu-r.1   123399446   splicing factor U2af small subunit A-like 
 hvu-r.1   123444062   splicing factor U2af small subunit B-like 
 hvu-r.1   123450295   splicing factor U2af small subunit B-like 
 sbi-r.1   8063598   splicing factor U2af small subunit B 
 sbi-r.1   8080823   splicing factor U2af small subunit B 
 sbi-r.1   110432231   splicing factor U2af small subunit A-like 
 bdi-r.1   100827377   splicing factor U2af small subunit B 
 bdi-r.1   100832894   splicing factor U2af small subunit A 
 bdi-r.1   100822535   splicing factor U2af small subunit B 
 cre-r.1   CHLRE_06g250950v5   uncharacterized protein 

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Top 50 coexpressed genes to 107951030 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107951030 (ghi-r.1 coexpression data)

CoexMap"107940226"


ghiLOC107940226 | Entrez gene ID : 107940226    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 3 3 3 3 2 3 2 2 2 3 2 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0089701 [list] [network] U2AF complex  (15 genes)  IEA  
GO:0005681 [list] [network] spliceosomal complex  (305 genes)  IEA  
GO MF
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (20 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (4664 genes)  IEA  
Protein XP_016729152.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for XP_016729152.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_016729152.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107951030
ghi-r.1
for
107936496
ghi-r.1
for
107891645
ath-u.5
for
U2AF35B
ath-u.5
for
ATU2AF35A
bra-r.6
for
103829051
bra-r.6
for
103839277
bra-r.6
for
103835383
bna-r.1
for
106425342
bna-r.1
for
106447072
bna-r.1
for
106367911
cit-r.1
for
102616318
cit-r.1
for
102615618
cit-r.1
for
102631146
gma-u.5
for
100783847
gma-u.5
for
100794975
gma-u.5
for
100799606
vvi-u.5
for
100247727
vvi-u.5
for
100266834
ppo-u.5
for
7494732
ppo-u.5
for
18100077
ppo-u.5
for
18097994
mtr-u.5
for
25487504
mtr-u.5
for
25499390
sly-u.5
for
101245917
sly-u.5
for
101263952
sot-r.1
for
102590524
sot-r.1
for
102596690
nta-r.1
for
107810075
nta-r.1
for
107789911
nta-r.1
for
107775509
osa-u.5
for
4339621
osa-u.5
for
9268567
zma-u.5
for
100272749
zma-u.5
for
100284238
zma-u.5
for
100191858
tae-r.2
for
123068262
tae-r.2
for
123070314
tae-r.2
for
123104186
hvu-r.1
for
123399446
hvu-r.1
for
123444062
hvu-r.1
for
123450295
sbi-r.1
for
8063598
sbi-r.1
for
8080823
sbi-r.1
for
110432231
bdi-r.1
for
100827377
bdi-r.1
for
100832894
bdi-r.1
for
100822535
cre-r.1
for
CHLRE_06g250950v5


Ortholog ID: 1944
Species ghi ghi ath ath bra bra bra bna bna bna cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107951030 LOC107912780 U2AF35B ATU2AF35A LOC103829051 LOC103839277 LOC103835383 LOC106381636 LOC106389581 LOC125577879 LOC102616318 LOC102615618 LOC102631146 LOC100794975 LOC100799606 LOC100811622 LOC100247727 LOC100266834 LOC7494732 LOC18100077 LOC18097994 LOC25487504 LOC25499390 LOC101245917 LOC101263952 LOC102590524 LOC102596690 LOC107810075 LOC107789911 LOC107775509 LOC4339621 LOC9268567 LOC100284238 LOC100282114 LOC103652188 LOC123068262 LOC123070314 LOC123121943 LOC123399446 LOC123444062 LOC123450295 LOC8063598 LOC8080823 LOC110432231 LOC100827377 LOC100832894 LOC100822535 CHLRE_06g250950v5
Function* splicing factor U2af small subunit B splicing factor U2af small subunit B Zinc finger C-x8-C-x5-C-x3-H type family protein U2 snRNP auxiliary factor small subunit splicing factor U2af small subunit A-like splicing factor U2af small subunit B splicing factor U2af small subunit A splicing factor U2af small subunit B-like splicing factor U2af small subunit A splicing factor U2af small subunit B-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit A-like splicing factor U2af 38 kDa subunit splicing factor U2af 38 kDa subunit splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit A splicing factor U2af small subunit A-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit A-like splicing factor U2af small subunit B splicing factor U2af small subunit A splicing factor U2af small subunit B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 4
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit00500 Starch and sucrose metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04016 MAPK signaling pathway - plant 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03040 Spliceosome 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 10
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
hvu04141 Protein processing in endoplasmic reticulum 5
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
hvu03040 Spliceosome 2
hvu04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 13
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107951030 107912780 834293 839657 103829051 103839277 103835383 106381636 106389581 125577879 102616318 102615618 102631146 100794975 100799606 100811622 100247727 100266834 7494732 18100077 18097994 25487504 25499390 101245917 101263952 102590524 102596690 107810075 107789911 107775509 4339621 9268567 100284238 100282114 103652188 123068262 123070314 123121943 123399446 123444062 123450295 8063598 8080823 110432231 100827377 100832894 100822535 5722203
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