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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494732   splicing factor U2af small subunit B 
 ppo-r.4   7494732   splicing factor U2af small subunit B 
 ppo-m.4   7494732   splicing factor U2af small subunit B 
 ppo-u.5   7474543   splicing factor U2af small subunit B 
 ppo-u.5   18100077   splicing factor U2af small subunit B 
 ppo-u.5   18097994   splicing factor U2af small subunit B 
 gma-u.5   100792507   splicing factor U2af small subunit A 
 gma-u.5   100783847   splicing factor U2af small subunit B 
 gma-u.5   100794975   splicing factor U2af small subunit B 
 mtr-u.5   25499390   splicing factor U2af small subunit B 
 mtr-u.5   25487504   splicing factor U2af small subunit B 
 ath-u.5   U2AF35B   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 ath-u.5   ATU2AF35A   U2 snRNP auxiliary factor small subunit 
 vvi-u.5   100247727   splicing factor U2af small subunit B 
 vvi-u.5   100266834   splicing factor U2af small subunit B 
 sly-u.5   101245917   splicing factor U2af small subunit B 
 sly-u.5   101263952   splicing factor U2af small subunit B 
 osa-u.5   9268567   splicing factor U2af small subunit A-like 
 osa-u.5   4339621   splicing factor U2af small subunit B 
 zma-u.5   100284238   splicing factor U2af 38 kDa subunit 
 zma-u.5   100282114   splicing factor U2af 38 kDa subunit 
 zma-u.5   100272749   uncharacterized LOC100272749 

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Top 50 coexpressed genes to 7494732 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494732 (ppo-u.5 coexpression data)

CoexMap"7494732"


ppoLOC7494732 | Entrez gene ID : 7494732    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 2 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:0089701 [list] [network] U2AF complex  (10 genes)  IEA  
GO:0005681 [list] [network] spliceosomal complex  (181 genes)  IEA  
GO MF
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (12 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2135 genes)  IEA  
Protein XP_002307825.1 [sequence] [blastp]
XP_024457945.1 [sequence] [blastp]
XP_024457946.1 [sequence] [blastp]
XP_024457947.1 [sequence] [blastp]
XP_024457949.1 [sequence] [blastp]
XP_052309235.1 [sequence] [blastp]
XP_052309236.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_002307825.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024457945.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024457946.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024457947.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024457949.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_052309235.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_052309236.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_002307825.1)
other 7,  chlo 3  (predict for XP_024457945.1)
other 7,  chlo 3  (predict for XP_024457946.1)
other 7,  chlo 3  (predict for XP_024457947.1)
other 7,  chlo 3  (predict for XP_024457949.1)
other 7,  chlo 3  (predict for XP_052309235.1)
other 7,  chlo 3  (predict for XP_052309236.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494732

.
ppo-r.4
for
7494732

.
ppo-m.4
for
7494732

.
ppo-u.5
for
7474543

.
ppo-u.5
for
18100077

.
ppo-u.5
for
18097994

.
gma-u.5
for
100792507

.
gma-u.5
for
100783847

.
gma-u.5
for
100794975

.
mtr-u.5
for
25499390

.
mtr-u.5
for
25487504

.
ath-u.5
for
U2AF35B

.
ath-u.5
for
ATU2AF35A

.
vvi-u.5
for
100247727

.
vvi-u.5
for
100266834

.
sly-u.5
for
101245917

.
sly-u.5
for
101263952

.
osa-u.5
for
9268567

.
osa-u.5
for
4339621

.
zma-u.5
for
100284238

.
zma-u.5
for
100282114

.
zma-u.5
for
100272749

.


Ortholog ID: 1944
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol ATU2AF35A U2AF35B LOC100794975 LOC100811622 LOC101263952 LOC101245917 LOC9268567 LOC4339621 LOC100282114 LOC100284238 LOC103839277 LOC103829051 LOC100266834 LOC100247727 LOC18097994 LOC7494732 LOC25487504 LOC25499390 LOC123121943 LOC123068262 LOC123399446 LOC123444062 LOC107912780 LOC106381636 LOC106389581 CHLRE_06g250950v5 LOC8063598 LOC8080823 LOC102590524 LOC102596690 LOC102615618 LOC102631146 LOC100822535 LOC100832894 LOC107775509 LOC107810075
Function* U2 snRNP auxiliary factor small subunit Zinc finger C-x8-C-x5-C-x3-H type family protein splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit A-like splicing factor U2af small subunit B splicing factor U2af 38 kDa subunit splicing factor U2af 38 kDa subunit splicing factor U2af small subunit B splicing factor U2af small subunit A-like splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit A splicing factor U2af small subunit B splicing factor U2af small subunit A-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit A uncharacterized protein splicing factor U2af small subunit B splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit B-like splicing factor U2af small subunit B splicing factor U2af small subunit A splicing factor U2af small subunit B splicing factor U2af small subunit B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 4
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04016 MAPK signaling pathway - plant 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03040 Spliceosome 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
hvu04141 Protein processing in endoplasmic reticulum 5
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
hvu03040 Spliceosome 2
hvu04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 13
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 10
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit00500 Starch and sucrose metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839657 834293 100794975 100811622 101263952 101245917 9268567 4339621 100282114 100284238 103839277 103829051 100266834 100247727 18097994 7494732 25487504 25499390 123121943 123068262 123399446 123444062 107912780 106381636 106389581 5722203 8063598 8080823 102590524 102596690 102615618 102631146 100822535 100832894 107775509 107810075
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