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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107941439   phosphoserine phosphatase, chloroplastic 
 ghi-r.1   107953478   phosphoserine phosphatase, chloroplastic 
 ath-u.5   PSP   3-phosphoserine phosphatase 
 bra-r.6   103872665   phosphoserine phosphatase, chloroplastic 
 bra-r.6   103835892   phosphoserine phosphatase, chloroplastic 
 bna-r.1   106427145   phosphoserine phosphatase, chloroplastic-like 
 bna-r.1   106422540   phosphoserine phosphatase, chloroplastic 
 bna-r.1   106387677   phosphoserine phosphatase, chloroplastic 
 cit-r.1   102624884   phosphoserine phosphatase, chloroplastic 
 gma-u.5   100814193   phosphoserine phosphatase, chloroplastic 
 gma-u.5   100789869   phosphoserine phosphatase, chloroplastic 
 vvi-u.5   100251806   phosphoserine phosphatase, chloroplastic 
 ppo-u.5   7484731   phosphoserine phosphatase, chloroplastic 
 mtr-u.5   11444501   phosphoserine phosphatase, chloroplastic 
 sly-u.5   101264434   phosphoserine phosphatase, chloroplastic 
 sot-r.1   102604859   phosphoserine phosphatase, chloroplastic 
 nta-r.1   107802392   phosphoserine phosphatase, chloroplastic 
 nta-r.1   107791189   phosphoserine phosphatase, chloroplastic-like 
 nta-r.1   107780735   phosphoserine phosphatase, chloroplastic-like 
 osa-u.5   4350964   phosphoserine phosphatase, chloroplastic 
 osa-u.5   4352281   phosphoserine phosphatase, chloroplastic 
 zma-u.5   100285190   uncharacterized LOC100285190 
 tae-r.2   123040914   phosphoserine phosphatase, chloroplastic 
 tae-r.2   123048926   phosphoserine phosphatase, chloroplastic 
 tae-r.2   123152050   phosphoserine phosphatase, chloroplastic 
 hvu-r.1   123409624   phosphoserine phosphatase, chloroplastic-like 
 hvu-r.1   123425098   phosphoserine phosphatase, chloroplastic-like 
 sbi-r.1   8079141   phosphoserine phosphatase, chloroplastic 
 bdi-r.1   100846637   phosphoserine phosphatase, chloroplastic 
 bdi-r.1   100837518   phosphoserine phosphatase, chloroplastic 
 cre-r.1   CHLRE_04g217955v5   uncharacterized protein 
 cre-r.1   CHLRE_04g217959v5   uncharacterized protein 

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Top 50 coexpressed genes to 107941439 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107941439 (ghi-r.1 coexpression data)

CoexMap"107941439"


ghiLOC107941439 | Entrez gene ID : 107941439    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 3 1 2 1 1 1 1 1 3 2 1 3 2 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00260 [list] [network] Glycine, serine and threonine metabolism (150 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0006564 [list] [network] L-serine biosynthetic process  (16 genes)  IEA  
GO:0016311 [list] [network] dephosphorylation  (428 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0036424 [list] [network] L-phosphoserine phosphatase activity  (6 genes)  IEA  
GO:0000287 [list] [network] magnesium ion binding  (292 genes)  IEA  
Protein XP_016730491.2 [sequence] [blastp]
XP_016730492.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 3,  chlo_mito 3  (predict for XP_016730491.2)
mito 7,  chlo 3  (predict for XP_016730492.1)
Subcellular
localization
TargetP
scret 3  (predict for XP_016730491.2)
mito 7,  chlo 4  (predict for XP_016730492.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107941439
ghi-r.1
for
107953478
ath-u.5
for
PSP
bra-r.6
for
103872665
bra-r.6
for
103835892
bna-r.1
for
106427145
bna-r.1
for
106422540
bna-r.1
for
106387677
cit-r.1
for
102624884
gma-u.5
for
100814193
gma-u.5
for
100789869
vvi-u.5
for
100251806
ppo-u.5
for
7484731
mtr-u.5
for
11444501
sly-u.5
for
101264434
sot-r.1
for
102604859
nta-r.1
for
107802392
nta-r.1
for
107791189
nta-r.1
for
107780735
osa-u.5
for
4350964
osa-u.5
for
4352281
zma-u.5
for
100285190
tae-r.2
for
123040914
tae-r.2
for
123048926
tae-r.2
for
123152050
hvu-r.1
for
123409624
hvu-r.1
for
123425098
sbi-r.1
for
8079141
bdi-r.1
for
100846637
bdi-r.1
for
100837518
cre-r.1
for
CHLRE_04g217955v5
cre-r.1
for
CHLRE_04g217959v5


Ortholog ID: 5620
Species ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta nta osa osa zma tae tae tae hvu hvu sbi bdi bdi cre cre
Symbol LOC107941439 LOC107953478 PSP LOC103872665 LOC103835892 LOC106427145 LOC106422540 LOC106361984 LOC102624884 LOC100814193 LOC100789869 LOC100251806 LOC7484731 LOC11444501 LOC101264434 LOC102604859 LOC107802392 LOC107791189 LOC142163246 LOC4350964 LOC4352281 LOC100285190 LOC123160685 LOC123168806 LOC123187801 LOC123409624 LOC123425098 LOC8079141 LOC100846637 LOC100837518 CHLRE_04g217955v5 CHLRE_04g217959v5
Function* phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic 3-phosphoserine phosphatase phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic-like phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic-like phosphoserine phosphatase, chloroplastic-like phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic uncharacterized LOC100285190 phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic-like phosphoserine phosphatase, chloroplastic-like phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic phosphoserine phosphatase, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01250 Biosynthesis of nucleotide sugars 4
ath00541 Biosynthesis of various nucleotide sugars 3
ath00260 Glycine, serine and threonine metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 5
gma00510 N-Glycan biosynthesis 3
gma00513 Various types of N-glycan biosynthesis 3
gma04141 Protein processing in endoplasmic reticulum 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 3
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 7
sly01230 Biosynthesis of amino acids 5
sly04141 Protein processing in endoplasmic reticulum 3
sly01250 Biosynthesis of nucleotide sugars 3
sly00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00750 Vitamin B6 metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 11
nta03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta00260 Glycine, serine and threonine metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 8
osa01200 Carbon metabolism 7
osa01230 Biosynthesis of amino acids 5
osa00710 Carbon fixation by Calvin cycle 3
osa00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 5
osa01230 Biosynthesis of amino acids 3
osa00020 Citrate cycle (TCA cycle) 3
osa00260 Glycine, serine and threonine metabolism 2
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma01230 Biosynthesis of amino acids 2
zma00860 Porphyrin metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00260 Glycine, serine and threonine metabolism 6
tae01230 Biosynthesis of amino acids 6
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00260 Glycine, serine and threonine metabolism 6
tae01230 Biosynthesis of amino acids 6
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 6
tae01200 Carbon metabolism 6
tae01230 Biosynthesis of amino acids 6
tae00270 Cysteine and methionine metabolism 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu01200 Carbon metabolism 5
hvu00270 Cysteine and methionine metabolism 3
hvu00260 Glycine, serine and threonine metabolism 3
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu01240 Biosynthesis of cofactors 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00230 Purine metabolism 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 9
bdi01200 Carbon metabolism 5
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
bdi00270 Cysteine and methionine metabolism 4
bdi00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 4
cre01230 Biosynthesis of amino acids 4
cre00270 Cysteine and methionine metabolism 2
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 4
cre01230 Biosynthesis of amino acids 4
cre00270 Cysteine and methionine metabolism 2
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107941439 107953478 838445 103872665 103835892 106427145 106422540 106361984 102624884 100814193 100789869 100251806 7484731 11444501 101264434 102604859 107802392 107791189 142163246 4350964 4352281 100285190 123160685 123168806 123187801 123409624 123425098 8079141 100846637 100837518 66053183 5726790
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