ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107942225	40S ribosomal protein S21
ghi-r.1	107893282	40S ribosomal protein S21
ghi-r.1	107893631	40S ribosomal protein S21
ghi-r.1	107927180	40S ribosomal protein S21
ath-u.5	AT3G53890	Ribosomal protein S21e
ath-u.5	AT5G27700	Ribosomal protein S21e
bra-r.6	103837171	40S ribosomal protein S21-2
bra-r.6	103841308	40S ribosomal protein S21-2
bna-r.1	125574908	40S ribosomal protein S21-2
bna-r.1	106382783	40S ribosomal protein S21-2
cit-r.1	102611170	40S ribosomal protein S21-2
cit-r.1	102609459	40S ribosomal protein S21-like
gma-u.5	100499937	40S ribosomal protein S21
gma-u.5	100817753	40S ribosomal protein S21
vvi-u.5	100246017	small ribosomal subunit protein eS21
vvi-u.5	100266516	small ribosomal subunit protein eS21
ppo-u.5	18098676	40S ribosomal protein S21-2
ppo-u.5	7481738	40S ribosomal protein S21-2
mtr-u.5	25488134	40S ribosomal protein S21-2
sly-u.5	101254027	small ribosomal subunit protein eS21y
sly-u.5	101245249	small ribosomal subunit protein eS21-like
sly-u.5	101244950	small ribosomal subunit protein eS21-like
sot-r.1	102592155	40S ribosomal protein S21-like
sot-r.1	102591827	40S ribosomal protein S21-like
sot-r.1	102581028	40S ribosomal protein S21-2
nta-r.1	107800934	small ribosomal subunit protein eS21
nta-r.1	107793454	small ribosomal subunit protein eS21
nta-r.1	107814345	small ribosomal subunit protein eS21
osa-u.5	4333672	small ribosomal subunit protein eS21-like
osa-u.5	4332813	40S ribosomal protein S21-like
zma-u.5	542449	40S ribosomal protein S21
zma-u.5	103630203	40S ribosomal protein S21-like
zma-u.5	542458	40S ribosomal subunit protein S21
tae-r.2	123085849	40S ribosomal protein S21
tae-r.2	123097498	40S ribosomal protein S21
hvu-r.1	123424781	40S ribosomal protein S21-like
hvu-r.1	123448626	40S ribosomal protein S21
sbi-r.1	8082666	40S ribosomal protein S21
sbi-r.1	8062964	40S ribosomal protein S21
bdi-r.1	100837758	40S ribosomal protein S21
bdi-r.1	100840852	40S ribosomal protein S21
cre-r.1	CHLRE_03g203450v5	ribosomal protein S21

Top 50 coexpressed genes to 107942225 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107942225 (ghi-r.1 coexpression data)

CoexMap"107942225"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03010 [list] [network] Ribosome (2429 genes)

GO BP

GO:0000461 [list] [network] endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(8 genes)	IEA
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(18 genes)	IEA
GO:0006412 [list] [network] translation	(1487 genes)	IEA

GO CC

GO:0022627 [list] [network] cytosolic small ribosomal subunit	(268 genes)	IEA
GO:0005840 [list] [network] ribosome	(1110 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(1075 genes)

IEA

Protein

XP_016731350.1 [sequence] [blastp]
XP_016731351.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 7, chlo 1, nucl 1	(predict for XP_016731350.1)
mito 7, chlo 1, nucl 1	(predict for XP_016731351.1)

Subcellular
localization
TargetP

other 7	(predict for XP_016731350.1)
other 7	(predict for XP_016731351.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107942225	ghi-r.1 for 107893282	ghi-r.1 for 107893631	ghi-r.1 for 107927180	ath-u.5 for AT3G53890	ath-u.5 for AT5G27700	bra-r.6 for 103837171	bra-r.6 for 103841308	bna-r.1 for 125574908	bna-r.1 for 106382783	cit-r.1 for 102611170	cit-r.1 for 102609459	gma-u.5 for 100499937	gma-u.5 for 100817753	vvi-u.5 for 100246017	vvi-u.5 for 100266516	ppo-u.5 for 18098676	ppo-u.5 for 7481738	mtr-u.5 for 25488134	sly-u.5 for 101254027	sly-u.5 for 101245249	sly-u.5 for 101244950	sot-r.1 for 102592155	sot-r.1 for 102591827	sot-r.1 for 102581028	nta-r.1 for 107800934	nta-r.1 for 107793454	nta-r.1 for 107814345	osa-u.5 for 4333672	osa-u.5 for 4332813	zma-u.5 for 542449	zma-u.5 for 103630203	zma-u.5 for 542458	tae-r.2 for 123085849	tae-r.2 for 123097498	hvu-r.1 for 123424781	hvu-r.1 for 123448626	sbi-r.1 for 8082666	sbi-r.1 for 8062964	bdi-r.1 for 100837758	bdi-r.1 for 100840852	cre-r.1 for CHLRE_03g203450v5

Ortholog

Ortholog ID: 1756

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

40S ribosomal protein S21

Ribosomal protein S21e

40S ribosomal protein S21-2

40S ribosomal protein S21-2-like

40S ribosomal protein S21-2