ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107942513	eukaryotic translation initiation factor 5A
ath-u.5	ELF5A-1	eukaryotic elongation factor 5A-1
ath-u.5	ELF5A-3	eukaryotic elongation factor 5A-3
ath-u.5	FBR12	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein
gma-u.5	100820467	eukaryotic translation initiation factor 5A-2
gma-u.5	100305510	uncharacterized LOC100305510
gma-u.5	100305991	eukaryotic translation initiation factor 5A-1
vvi-u.5	100852874	eukaryotic translation initiation factor 5A-2
vvi-u.5	100247352	eukaryotic translation initiation factor 5A-2
vvi-u.5	100267006	eukaryotic translation initiation factor 5A
ppo-u.5	7465957	eukaryotic translation initiation factor 5A
ppo-u.5	7489445	eukaryotic translation initiation factor 5A
ppo-u.5	7498196	mitotic checkpoint protein BUB3.3
mtr-u.5	25493853	eukaryotic translation initiation factor 5A-1
mtr-u.5	11413270	eukaryotic translation initiation factor 5A-5
mtr-u.5	25494286	eukaryotic translation initiation factor 5A-2
sly-u.5	eIF-5A2	eukaryotic translation initiation factor 5A-2
sly-u.5	eIF-5A1	eukaryotic translation initiation factor 5A-1
sly-u.5	101250392	eukaryotic translation initiation factor 5A-3
osa-u.5	4334177	eukaryotic translation initiation factor 5A-2
osa-u.5	4343796	eukaryotic translation initiation factor 5A
osa-u.5	4352300	eukaryotic translation initiation factor 5A-2
zma-u.5	100192991	eukaryotic translation initiation factor 5A-1/2
zma-u.5	542601	eukaryotic translation initiation factor 5A
zma-u.5	542537	elongation initiation factor5A

Top 50 coexpressed genes to 107942513 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107942513 (ghi-r.1 coexpression data)

CoexMap"107942513"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045901 [list] [network] positive regulation of translational elongation	(29 genes)	IEA
GO:0045905 [list] [network] positive regulation of translational termination	(31 genes)	IEA
GO:0006414 [list] [network] translational elongation	(114 genes)	IEA

GO CC

GO MF

GO:0003746 [list] [network] translation elongation factor activity	(86 genes)	IEA
GO:0043022 [list] [network] ribosome binding	(137 genes)	IEA
GO:0003723 [list] [network] RNA binding	(3053 genes)	IEA

Protein

XP_040963053.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, extr 1, chlo_mito 1

(predict for XP_040963053.1)

Subcellular
localization
TargetP

other 9

(predict for XP_040963053.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107942513	ath-u.5 for ELF5A-1	ath-u.5 for ELF5A-3	ath-u.5 for FBR12	gma-u.5 for 100820467	gma-u.5 for 100305510	gma-u.5 for 100305991	vvi-u.5 for 100852874	vvi-u.5 for 100247352	vvi-u.5 for 100267006	ppo-u.5 for 7465957	ppo-u.5 for 7489445	ppo-u.5 for 7498196	mtr-u.5 for 25493853	mtr-u.5 for 11413270	mtr-u.5 for 25494286	sly-u.5 for eIF-5A2	sly-u.5 for eIF-5A1	sly-u.5 for 101250392	osa-u.5 for 4334177	osa-u.5 for 4343796	osa-u.5 for 4352300	zma-u.5 for 100192991	zma-u.5 for 542601	zma-u.5 for 542537

Ortholog

Ortholog ID: 1002

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107887366

LOC121219353

ELF5A-3

FBR12

eIF-5A1

Function^*

eukaryotic translation initiation factor 5A-2

eukaryotic elongation factor 5A-3

Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein

eukaryotic translation initiation factor 5A-3

eukaryotic translation initiation factor 5A-2

eukaryotic translation initiation factor 5A-1

uncharacterized LOC100305510

eukaryotic translation initiation factor 5A-2

eukaryotic translation initiation factor 5A

mitotic checkpoint protein BUB3.3

eukaryotic translation initiation factor 5A-2

eukaryotic translation initiation factor 5A-5

eukaryotic translation initiation factor 5A-3

eukaryotic translation initiation factor 5A-1

eukaryotic translation initiation factor 5A-5-like

eukaryotic translation initiation factor 5A-4-like

eukaryotic translation initiation factor 5A-1

eukaryotic translation initiation factor 5A-3

eukaryotic translation initiation factor 5A-2

elongation initiation factor5A

eukaryotic translation initiation factor 5A

eukaryotic translation initiation factor 5A-4

eukaryotic translation initiation factor 5A-1-like

eukaryotic translation initiation factor 5A-4

eukaryotic translation initiation factor 5A-like

eukaryotic translation initiation factor 5A

eukaryotic translation initiation factor 5A-2

eukaryotic translation initiation factor 5A-1/2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4
ghi00430	Taurine and hypotaurine metabolism	2
ghi00460	Cyanoamino acid metabolism	2
ghi00480	Glutathione metabolism	2
ghi00590	Arachidonic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	8
ghi04075	Plant hormone signal transduction	8
ghi04626	Plant-pathogen interaction	8
ghi04070	Phosphatidylinositol signaling system	6
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	8
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2
cit03013	Nucleocytoplasmic transport	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	12
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00270	Cysteine and methionine metabolism	3
mtr00190	Oxidative phosphorylation	2
mtr00480	Glutathione metabolism	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	5
sot04141	Protein processing in endoplasmic reticulum	5
sot03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	18
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	7
nta04145	Phagosome	7
nta04141	Protein processing in endoplasmic reticulum	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	5
tae03015	mRNA surveillance pathway	3
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu03040	Spliceosome	2
hvu03083	Polycomb repressive complex	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi00020	Citrate cycle (TCA cycle)	2
sbi00480	Glutathione metabolism	2
sbi01200	Carbon metabolism	2
sbi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01210	2-Oxocarboxylic acid metabolism	3
cre01230	Biosynthesis of amino acids	3
cre03013	Nucleocytoplasmic transport	2
cre00290	Valine, leucine and isoleucine biosynthesis	2
cre00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107887366

121219353

843273

839203

103831337

103840630

106425610

106389545

102622877

102630849

100305991

100305510

100247352

100852874

7489445

7498196

25494286

11413270

101250392

543667

102605379

102587998

107823125

107788104

4352300

4334177

542537

542601

123102730

123119905

123426333

123452984

110432363

8060633

100822202

100842478

5725597

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Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107942513 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107942513 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**