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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107942869   E3 ubiquitin-protein ligase RNF170 
 ghi-r.1   107943304   E3 ubiquitin-protein ligase RNF170 
 ghi-r.1   107928799   E3 ubiquitin-protein ligase RNF170 
 ghi-r.1   107894691   E3 ubiquitin-protein ligase RNF170 
 ath-u.5   AT4G33940   RING/U-box superfamily protein 
 bra-r.6   103843481   E3 ubiquitin-protein ligase RNF170 
 bra-r.6   103862307   E3 ubiquitin-protein ligase RNF170 
 bna-r.1   106441145   E3 ubiquitin-protein ligase RNF170 
 bna-r.1   106376004   E3 ubiquitin-protein ligase RNF170-like 
 sly-u.5   101249497   RING finger protein 
 sly-u.5   101249963   uncharacterized LOC101249963 
 sot-r.1   102602273   E3 ubiquitin-protein ligase RNF170-like 
 sot-r.1   102601943   E3 ubiquitin-protein ligase RNF170-like 
 nta-r.1   107800752   uncharacterized LOC107800752 
 nta-r.1   107806137   uncharacterized LOC107806137 
 nta-r.1   107765326   uncharacterized LOC107765326 

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Top 50 coexpressed genes to 107942869 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107942869 (ghi-r.1 coexpression data)

CoexMap"107942869"


ghiLOC107942869 | Entrez gene ID : 107942869    
Species ghi ath bra bna sly sot nta sbi osa gma cit mtr tae hvu ppo vvi zma cre bdi
Paralog 4 1 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
Protein XP_040965951.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_040965951.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040965951.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107942869
ghi-r.1
for
107943304
ghi-r.1
for
107928799
ghi-r.1
for
107894691
ath-u.5
for
AT4G33940
bra-r.6
for
103843481
bra-r.6
for
103862307
bna-r.1
for
106441145
bna-r.1
for
106376004
sly-u.5
for
101249497
sly-u.5
for
101249963
sot-r.1
for
102602273
sot-r.1
for
102601943
nta-r.1
for
107800752
nta-r.1
for
107806137
nta-r.1
for
107765326


Ortholog ID: 11719
Species ghi ghi ghi ath bra bra bna bna bna sly sly sot sot nta nta nta
Symbol LOC107942869 LOC107943304 LOC107894691 AT4G33940 LOC103843481 LOC103862307 LOC106376004 LOC106370861 LOC111198118 LOC101249497 LOC101249963 LOC102602273 LOC102601943 LOC107765326 LOC107821068 LOC107762044
Function* E3 ubiquitin-protein ligase RNF170 E3 ubiquitin-protein ligase RNF170 E3 ubiquitin-protein ligase RNF170 RING/U-box superfamily protein E3 ubiquitin-protein ligase RNF170 E3 ubiquitin-protein ligase RNF170 E3 ubiquitin-protein ligase RNF170-like E3 ubiquitin-protein ligase RNF170 E3 ubiquitin-protein ligase RNF170-like RING finger protein uncharacterized LOC101249963 E3 ubiquitin-protein ligase RNF170-like E3 ubiquitin-protein ligase RNF170-like uncharacterized LOC107765326 uncharacterized LOC107821068 uncharacterized LOC107762044
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00030 Pentose phosphate pathway 2
ghi00480 Glutathione metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 4
sot00051 Fructose and mannose metabolism 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 7
nta04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107942869 107943304 107894691 829539 103843481 103862307 106376004 106370861 111198118 101249497 101249963 102602273 102601943 107765326 107821068 107762044
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