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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107944529   DELLA protein GAIP-B 
 ghi-r.1   107963117   DELLA protein GAIP-like 
 ghi-r.1   107953968   DELLA protein GAI 
 ghi-r.1   107887343   DELLA protein GAI-like 
 ath-u.5   GAI   GRAS family transcription factor family protein 
 ath-u.5   RGA1   GRAS family transcription factor family protein 
 ath-u.5   RGL2   RGA-like 2 
 bra-r.6   103839478   DELLA protein RGA2-like 
 bra-r.6   103827572   DELLA protein RGA1 
 bra-r.6   103833178   DELLA protein RGL3 
 bna-r.1   106426199   DELLA protein RGL3 
 bna-r.1   125587833   DELLA protein RGL2-like 
 bna-r.1   125585596   DELLA protein RGL1-like 
 cit-r.1   102614400   DELLA protein GAIP-B 
 cit-r.1   102629959   DELLA protein GAI 
 gma-u.5   100799695   DELLA protein 1 
 gma-u.5   100797336   DELLA protein 2 
 gma-u.5   GAI2   DELLA protein GAI 2 
 vvi-u.5   100253268   DELLA protein GAI 
 vvi-u.5   100232937   DELLA protein GAI1 
 ppo-u.5   7475521   DELLA protein GAIP 
 ppo-u.5   7482891   DELLA protein GAIP-B 
 ppo-u.5   7493546   DELLA protein GAI 
 mtr-u.5   25489240   DELLA protein 1-like 
 mtr-u.5   120577405   DELLA protein 2 
 sly-u.5   GAI   DELLA protein GAI 
 sot-r.1   102587893   DELLA protein GAI 
 nta-r.1   107766978   DELLA protein GAI1-like 
 nta-r.1   107777199   DELLA protein GAI1 
 nta-r.1   107823822   DELLA protein GAI-like 
 osa-u.5   4333860   DELLA protein SLR1-like 
 zma-u.5   100191728   DELLA protein DWARF8 
 zma-u.5   100127531   DELLA protein DWARF8-like 
 tae-r.2   123090825   DELLA protein RHT-1-like 
 tae-r.2   123095833   DELLA protein RHT-1 
 hvu-r.1   123447390   DELLA protein SLN1 
 sbi-r.1   8062929   DELLA protein DWARF8 
 bdi-r.1   100844941   DELLA protein SLN1 

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Top 50 coexpressed genes to 107944529 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107944529 (ghi-r.1 coexpression data)

CoexMap"107944529"


ghiLOC107944529 | Entrez gene ID : 107944529    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 2 3 2 1 1 3 1 2 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)
GO BP
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway  (13 genes)  IEA  
GO:0010187 [list] [network] negative regulation of seed germination  (13 genes)  IEA  
GO:0042538 [list] [network] hyperosmotic salinity response  (13 genes)  IEA  
GO:2000033 [list] [network] regulation of seed dormancy process  (13 genes)  IEA  
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process  (18 genes)  IEA  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (19 genes)  IEA  
GO:0009863 [list] [network] salicylic acid mediated signaling pathway  (26 genes)  IEA  
GO:0009737 [list] [network] response to abscisic acid  (186 genes)  IEA  
GO:0009723 [list] [network] response to ethylene  (233 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016733838.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1  (predict for XP_016733838.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016733838.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107944529
ghi-r.1
for
107963117
ghi-r.1
for
107953968
ghi-r.1
for
107887343
ath-u.5
for
GAI
ath-u.5
for
RGA1
ath-u.5
for
RGL2
bra-r.6
for
103839478
bra-r.6
for
103827572
bra-r.6
for
103833178
bna-r.1
for
106426199
bna-r.1
for
125587833
bna-r.1
for
125585596
cit-r.1
for
102614400
cit-r.1
for
102629959
gma-u.5
for
100799695
gma-u.5
for
100797336
gma-u.5
for
GAI2
vvi-u.5
for
100253268
vvi-u.5
for
100232937
ppo-u.5
for
7475521
ppo-u.5
for
7482891
ppo-u.5
for
7493546
mtr-u.5
for
25489240
mtr-u.5
for
120577405
sly-u.5
for
GAI
sot-r.1
for
102587893
nta-r.1
for
107766978
nta-r.1
for
107777199
nta-r.1
for
107823822
osa-u.5
for
4333860
zma-u.5
for
100191728
zma-u.5
for
100127531
tae-r.2
for
123090825
tae-r.2
for
123095833
hvu-r.1
for
123447390
sbi-r.1
for
8062929
bdi-r.1
for
100844941


Ortholog ID: 2783
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sot nta nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC107944529 LOC107953968 LOC107918217 RGA1 RGL2 RGL3 LOC103833178 LOC103852324 LOC103855161 LOC106426199 LOC106387732 LOC106450539 LOC102614400 LOC102629959 LOC100797336 GAI2 GAI1 LOC100253268 LOC100232937 LOC7475521 LOC7482891 LOC7493546 LOC25489240 LOC120577405 GAI LOC102587893 LOC107766978 LOC107777199 LOC142178915 LOC4333860 LOC100191728 LOC100127531 LOC123095833 LOC123087136 LOC123447390 LOC8062929 LOC100844941
Function* DELLA protein GAIP-B DELLA protein GAI DELLA protein GAIP-B-like GRAS family transcription factor family protein RGA-like 2 RGA-like protein 3 DELLA protein RGL3 DELLA protein RGL1 DELLA protein RGL2 DELLA protein RGL3 DELLA protein RGL3-like DELLA protein RGL2 DELLA protein GAIP-B DELLA protein GAI DELLA protein 2 DELLA protein GAI 2 DELLA protein GAI 1 DELLA protein GAI DELLA protein GAI1 DELLA protein GAIP DELLA protein GAIP-B DELLA protein GAI DELLA protein 1-like DELLA protein 2 DELLA protein GAI DELLA protein GAI DELLA protein GAI1-like DELLA protein GAI1 DELLA protein GAI-like DELLA protein SLR1-like DELLA protein DWARF8 DELLA protein DWARF8-like DELLA protein RHT-1 DELLA protein RHT-1-like DELLA protein SLN1 DELLA protein DWARF8 DELLA protein SLN1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 5
bra00592 alpha-Linolenic acid metabolism 2
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
bna04016 MAPK signaling pathway - plant 4
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
bna04016 MAPK signaling pathway - plant 4
bna00904 Diterpenoid biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00450 Selenocompound metabolism 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00564 Glycerophospholipid metabolism 3
osa00565 Ether lipid metabolism 3
osa04144 Endocytosis 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107944529 107953968 107918217 814686 821251 831615 103833178 103852324 103855161 106426199 106387732 106450539 102614400 102629959 100797336 547719 547718 100253268 100232937 7475521 7482891 7493546 25489240 120577405 543881 102587893 107766978 107777199 142178915 4333860 100191728 100127531 123095833 123087136 123447390 8062929 100844941
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