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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107948502   probable inactive shikimate kinase like 1, chloroplastic 
 ath-u.5   SKL1   shikimate kinase like 1 
 gma-u.5   100781076   shikimate kinase, chloroplastic-like 
 gma-u.5   100526928   probable inactive shikimate kinase like 1, chloroplastic 
 vvi-u.5   100261362   probable inactive shikimate kinase like 1, chloroplastic 
 vvi-u.5   100266919   probable inactive shikimate kinase like 1, chloroplastic 
 ppo-u.5   18107134   probable inactive shikimate kinase like 1, chloroplastic 
 mtr-u.5   25495942   probable inactive shikimate kinase like 1, chloroplastic 
 sly-u.5   101260492   probable inactive shikimate kinase like 1, chloroplastic 
 osa-u.5   4326439   probable inactive shikimate kinase like 1, chloroplastic 
 zma-u.5   100283991   shikimate kinase family protein 

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Top 50 coexpressed genes to 107948502 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107948502 (ghi-r.1 coexpression data)

CoexMap"107948502"


ghiLOC107948502 | Entrez gene ID : 107948502    
Species ghi ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit bna bdi sbi cre
Paralog 1 1 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
Protein XP_016738561.1 [sequence] [blastp]
XP_016738562.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_016738561.1)
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_016738562.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016738561.1)
chlo 9  (predict for XP_016738562.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107948502

.
ath-u.5
for
SKL1

.
gma-u.5
for
100781076

.
gma-u.5
for
100526928

.
vvi-u.5
for
100261362

.
vvi-u.5
for
100266919

.
ppo-u.5
for
18107134

.
mtr-u.5
for
25495942

.
sly-u.5
for
101260492

.
osa-u.5
for
4326439

.
zma-u.5
for
100283991

.


Ortholog ID: 10118
Species ath gma gma sly osa zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol SKL1 LOC100781076 LOC100526928 LOC101260492 LOC4326439 LOC100283991 LOC103875266 LOC100266919 LOC100261362 LOC18107134 LOC25495942 LOC123064856 LOC123077212 LOC123442742 LOC107948501 LOC107948502 LOC125575955 LOC106410266 LOC8068868 LOC102585983 LOC102609441 LOC100828792 LOC107808816 LOC107795619
Function* shikimate kinase like 1 shikimate kinase, chloroplastic-like probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic shikimate kinase family protein probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic putative inactive shikimate kinase like 1, chloroplastic putative inactive shikimate kinase like 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 3
mtr00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00750 Vitamin B6 metabolism 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00450 Selenocompound metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00010 Glycolysis / Gluconeogenesis 2
nta00020 Citrate cycle (TCA cycle) 2
nta00620 Pyruvate metabolism 2
nta00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822306 100781076 100526928 101260492 4326439 100283991 103875266 100266919 100261362 18107134 25495942 123064856 123077212 123442742 107948501 107948502 125575955 106410266 8068868 102585983 102609441 100828792 107808816 107795619
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