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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107948554   protein PAT1 homolog 1 
 ghi-r.1   107919862   protein PAT1 homolog 1 
 ghi-r.1   107912935   protein PAT1 homolog 
 ghi-r.1   107912671   protein PAT1 homolog 1 
 ath-u.5   AT3G22270   Topoisomerase II-associated protein PAT1 
 ath-u.5   AT4G14990   Topoisomerase II-associated protein PAT1 
 ath-u.5   AT1G79090   topoisomerase II-associated protein 
 bra-r.6   103869095   protein PAT1 homolog 1 
 bra-r.6   103830497   protein PAT1 homolog 
 bra-r.6   103832387   protein PAT1 homolog 
 bna-r.1   106418214   protein PAT1 homolog 1 
 bna-r.1   106372716   protein PAT1 homolog 2 
 bna-r.1   106369215   protein PAT1 homolog 2-like 
 cit-r.1   102618153   protein PAT1 homolog 1-like 
 cit-r.1   102611484   protein PAT1 homolog 
 gma-u.5   100787112   protein PAT1 homolog 
 gma-u.5   100812450   protein PAT1 homolog 1 
 gma-u.5   100805313   protein PAT1 homolog 
 vvi-u.5   100267869   protein PAT1 homolog 
 vvi-u.5   100255521   protein PAT1 homolog 2 
 ppo-u.5   7454988   protein PAT1 homolog 
 ppo-u.5   18106064   protein PAT1 homolog 1 
 ppo-u.5   7480371   protein PAT1 homolog 
 mtr-u.5   25487016   protein PAT1 homolog 
 mtr-u.5   25487017   protein PAT1 homolog 
 mtr-u.5   120577294   protein PAT1 homolog 1 
 sly-u.5   101260608   protein PAT1 homolog 2 
 sly-u.5   101253667   protein PAT1 homolog 
 sly-u.5   101257075   protein PAT1 homolog 1-like 
 sot-r.1   102596910   protein PAT1 homolog 1 
 sot-r.1   102604826   uncharacterized LOC102604826 
 nta-r.1   107764136   protein PAT1 homolog 1 
 nta-r.1   107780052   protein PAT1 homolog 
 nta-r.1   107794986   protein PAT1 homolog 1 
 osa-u.5   4325594   protein PAT1 homolog 1 
 osa-u.5   4329076   protein PAT1 homolog 
 osa-u.5   4329480   protein PAT1 homolog 1 
 zma-u.5   103630584   protein PAT1 homolog 1 
 zma-u.5   109942640   protein PAT1 homolog 1-like 
 zma-u.5   100383823   Topoisomerase II-associated protein PAT1 
 tae-r.2   123062178   protein PAT1 homolog 1 
 tae-r.2   123122381   protein PAT1 homolog 
 tae-r.2   123139643   protein PAT1 homolog 1 
 hvu-r.1   123447445   protein PAT1 homolog 1-like 
 hvu-r.1   123444512   protein PAT1 homolog 1-like 
 hvu-r.1   123400158   protein PAT1 homolog 
 sbi-r.1   8077763   protein PAT1 homolog 1 
 sbi-r.1   8067493   uncharacterized LOC8067493 
 sbi-r.1   8072123   uncharacterized LOC8072123 
 bdi-r.1   100838182   protein PAT1 homolog 1 
 bdi-r.1   100832909   protein PAT1 homolog 
 bdi-r.1   100841028   protein PAT1 homolog 1 
 cre-r.1   CHLRE_06g278203v5   uncharacterized protein 

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Top 50 coexpressed genes to 107948554 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107948554 (ghi-r.1 coexpression data)

CoexMap"107948554"


ghiLOC107948554 | Entrez gene ID : 107948554    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 2 3 3 3 2 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03018 [list] [network] RNA degradation (286 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (29 genes)  IEA  
GO:0033962 [list] [network] P-body assembly  (41 genes)  IEA  
GO CC
GO:0000932 [list] [network] P-body  (130 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016738630.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_016738630.2)
Subcellular
localization
TargetP
other 8  (predict for XP_016738630.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107948554
ghi-r.1
for
107919862
ghi-r.1
for
107912935
ghi-r.1
for
107912671
ath-u.5
for
AT3G22270
ath-u.5
for
AT4G14990
ath-u.5
for
AT1G79090
bra-r.6
for
103869095
bra-r.6
for
103830497
bra-r.6
for
103832387
bna-r.1
for
106418214
bna-r.1
for
106372716
bna-r.1
for
106369215
cit-r.1
for
102618153
cit-r.1
for
102611484
gma-u.5
for
100787112
gma-u.5
for
100812450
gma-u.5
for
100805313
vvi-u.5
for
100267869
vvi-u.5
for
100255521
ppo-u.5
for
7454988
ppo-u.5
for
18106064
ppo-u.5
for
7480371
mtr-u.5
for
25487016
mtr-u.5
for
25487017
mtr-u.5
for
120577294
sly-u.5
for
101260608
sly-u.5
for
101253667
sly-u.5
for
101257075
sot-r.1
for
102596910
sot-r.1
for
102604826
nta-r.1
for
107764136
nta-r.1
for
107780052
nta-r.1
for
107794986
osa-u.5
for
4325594
osa-u.5
for
4329076
osa-u.5
for
4329480
zma-u.5
for
103630584
zma-u.5
for
109942640
zma-u.5
for
100383823
tae-r.2
for
123062178
tae-r.2
for
123122381
tae-r.2
for
123139643
hvu-r.1
for
123447445
hvu-r.1
for
123444512
hvu-r.1
for
123400158
sbi-r.1
for
8077763
sbi-r.1
for
8067493
sbi-r.1
for
8072123
bdi-r.1
for
100838182
bdi-r.1
for
100832909
bdi-r.1
for
100841028
cre-r.1
for
CHLRE_06g278203v5


Ortholog ID: 921
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107948554 LOC107909163 LOC107928350 AT3G22270 AT4G14990 AT1G79090 LOC103869095 LOC103832387 LOC103834665 LOC106353417 LOC106346757 LOC125602342 LOC102618153 LOC102611484 LOC100787112 LOC100812450 LOC100779096 LOC100267869 LOC100255521 LOC7454988 LOC18106064 LOC7480371 LOC25487016 LOC25487017 LOC120577294 LOC101260608 LOC101253667 LOC101257075 LOC102596910 LOC102604826 LOC102578809 LOC107794986 LOC107796298 LOC107781173 LOC4329076 LOC4329480 LOC9270665 LOC109942640 LOC100383823 LOC100272651 LOC123139643 LOC123104606 LOC123079296 LOC123447445 LOC123444512 LOC123400158 LOC8077763 LOC8067493 LOC8072123 LOC100838182 LOC100841028 LOC100835878 CHLRE_06g278203v5
Function* protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog Topoisomerase II-associated protein PAT1 Topoisomerase II-associated protein PAT1 topoisomerase II-associated protein protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 2 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 2 protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog 1 uncharacterized LOC102604826 uncharacterized LOC102578809 protein PAT1 homolog 1 protein PAT1 homolog 2-like protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1-like Topoisomerase II-associated protein PAT1 uncharacterized LOC100272651 protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 1-like protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog 1 uncharacterized LOC8067493 uncharacterized LOC8072123 protein PAT1 homolog 1 protein PAT1 homolog 1 protein PAT1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma03082 ATP-dependent chromatin remodeling 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma04148 Efferocytosis 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03015 mRNA surveillance pathway 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 3
osa03018 RNA degradation 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae03082 ATP-dependent chromatin remodeling 3
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 5
hvu03013 Nucleocytoplasmic transport 4
hvu04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107948554 107909163 107928350 821797 827158 844250 103869095 103832387 103834665 106353417 106346757 125602342 102618153 102611484 100787112 100812450 100779096 100267869 100255521 7454988 18106064 7480371 25487016 25487017 120577294 101260608 101253667 101257075 102596910 102604826 102578809 107794986 107796298 107781173 4329076 4329480 9270665 109942640 100383823 100272651 123139643 123104606 123079296 123447445 123444512 123400158 8077763 8067493 8072123 100838182 100841028 100835878 5723634
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