ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107949559	CTP synthase
ghi-r.1	107893545	CTP synthase
ghi-r.1	107945267	CTP synthase
ghi-r.1	107924592	CTP synthase
ath-u.5	emb2742	CTP synthase family protein
ath-u.5	AT4G20320	CTP synthase family protein
bra-r.6	103870238	CTP synthase
bra-r.6	103867409	CTP synthase 1
bra-r.6	103858122	CTP synthase
bna-r.1	106411488	CTP synthase
bna-r.1	111210395	CTP synthase 1
bna-r.1	106398952	CTP synthase-like
cit-r.1	102620771	uncharacterized LOC102620771
cit-r.1	102617170	uncharacterized LOC102617170
cit-r.1	102615633	uncharacterized LOC102615633
gma-u.5	100819563	CTP synthase
gma-u.5	100816167	CTP synthase
gma-u.5	100805857	CTP synthase
vvi-u.5	100249622	uncharacterized LOC100249622
vvi-u.5	100248684	uncharacterized LOC100248684
vvi-u.5	100248481	uncharacterized LOC100248481
ppo-u.5	7497562	uncharacterized LOC7497562
ppo-u.5	7495226	uncharacterized LOC7495226
ppo-u.5	7464580	uncharacterized LOC7464580
mtr-u.5	11419996	CTP synthase
mtr-u.5	25502430	CTP synthase
mtr-u.5	11444287	CTP synthase
sly-u.5	101257698	uncharacterized LOC101257698
sly-u.5	101244545	uncharacterized LOC101244545
sly-u.5	101247459	uncharacterized LOC101247459
sot-r.1	102589647	CTP synthase-like
sot-r.1	102578541	CTP synthase-like
sot-r.1	102597065	CTP synthase-like
nta-r.1	107805414	uncharacterized LOC107805414
nta-r.1	107823440	uncharacterized LOC107823440
nta-r.1	107790774	CTP synthase-like
osa-u.5	4352499	uncharacterized LOC4352499
osa-u.5	4339675	uncharacterized LOC4339675
zma-u.5	100382896	uncharacterized LOC100382896
zma-u.5	100280500	CTP synthase
zma-u.5	100281709	CTP synthase
tae-r.2	123110771	CTP synthase
tae-r.2	123183209	CTP synthase
tae-r.2	123147533	CTP synthase
hvu-r.1	123443884	CTP synthase-like
hvu-r.1	123452239	CTP synthase-like
hvu-r.1	123451190	CTP synthase-like
sbi-r.1	8066360	CTP synthase
sbi-r.1	8084832	CTP synthase
sbi-r.1	8083780	CTP synthase
bdi-r.1	100836868	CTP synthase
bdi-r.1	100834103	CTP synthase
bdi-r.1	100828089	CTP synthase
cre-r.1	CHLRE_09g406050v5	uncharacterized protein

Top 50 coexpressed genes to 107949559 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107949559 (ghi-r.1 coexpression data)

CoexMap"107949559"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00240 [list] [network] Pyrimidine metabolism (157 genes)

ghi01232 [list] [network] Nucleotide metabolism (202 genes)

ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)

GO BP

GO:0006241 [list] [network] CTP biosynthetic process	(25 genes)	IEA
GO:0019856 [list] [network] pyrimidine nucleobase biosynthetic process	(37 genes)	IEA

GO CC

GO MF

GO:0003883 [list] [network] CTP synthase activity	(15 genes)	IEA
GO:0042802 [list] [network] identical protein binding	(46 genes)	IEA

Protein

XP_016739747.2 [sequence] [blastp]
XP_016739754.2 [sequence] [blastp]
XP_040931651.1 [sequence] [blastp]
XP_040931652.1 [sequence] [blastp]
XP_040931653.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, vacu 2, extr 1, nucl 1, plas 1, nucl_plas 1	(predict for XP_016739747.2)
chlo 5, vacu 2, extr 1, nucl 1, plas 1, nucl_plas 1	(predict for XP_016739754.2)
chlo 6, vacu 2, nucl 1, plas 1, extr 1, nucl_plas 1	(predict for XP_040931651.1)
chlo 5, vacu 2, extr 1, nucl 1, plas 1, nucl_plas 1	(predict for XP_040931652.1)
chlo 5, vacu 2, nucl 1, plas 1, extr 1, cyto_nucl 1, cysk_nucl 1	(predict for XP_040931653.1)

Subcellular
localization
TargetP

scret 4, other 3	(predict for XP_016739747.2)
scret 4, other 3	(predict for XP_016739754.2)
scret 4, other 3	(predict for XP_040931651.1)
scret 4, other 3	(predict for XP_040931652.1)
scret 4, other 3	(predict for XP_040931653.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107949559	ghi-r.1 for 107893545	ghi-r.1 for 107945267	ghi-r.1 for 107924592	ath-u.5 for emb2742	ath-u.5 for AT4G20320	bra-r.6 for 103870238	bra-r.6 for 103867409	bra-r.6 for 103858122	bna-r.1 for 106411488	bna-r.1 for 111210395	bna-r.1 for 106398952	cit-r.1 for 102620771	cit-r.1 for 102617170	cit-r.1 for 102615633	gma-u.5 for 100819563	gma-u.5 for 100816167	gma-u.5 for 100805857	vvi-u.5 for 100249622	vvi-u.5 for 100248684	vvi-u.5 for 100248481	ppo-u.5 for 7497562	ppo-u.5 for 7495226	ppo-u.5 for 7464580	mtr-u.5 for 11419996	mtr-u.5 for 25502430	mtr-u.5 for 11444287	sly-u.5 for 101257698	sly-u.5 for 101244545	sly-u.5 for 101247459	sot-r.1 for 102589647	sot-r.1 for 102578541	sot-r.1 for 102597065	nta-r.1 for 107805414	nta-r.1 for 107823440	nta-r.1 for 107790774	osa-u.5 for 4352499	osa-u.5 for 4339675	zma-u.5 for 100382896	zma-u.5 for 100280500	zma-u.5 for 100281709	tae-r.2 for 123110771	tae-r.2 for 123183209	tae-r.2 for 123147533	hvu-r.1 for 123443884	hvu-r.1 for 123452239	hvu-r.1 for 123451190	sbi-r.1 for 8066360	sbi-r.1 for 8084832	sbi-r.1 for 8083780	bdi-r.1 for 100836868	bdi-r.1 for 100834103	bdi-r.1 for 100828089	cre-r.1 for CHLRE_09g406050v5

Ortholog

Ortholog ID: 628

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

CTP synthase

CTP synthase family protein

CTP synthase

CTP synthase 1

CTP synthase

CTP synthase-like

CTP synthase

CTP synthase-like

uncharacterized LOC102620771

uncharacterized LOC102617170

uncharacterized LOC102615633

CTP synthase

uncharacterized LOC100249622

uncharacterized LOC100248684

uncharacterized LOC100248481

uncharacterized LOC7495226

uncharacterized LOC7460661

uncharacterized LOC7477774

CTP synthase

uncharacterized LOC101257698

uncharacterized LOC101244545

uncharacterized LOC101247459

CTP synthase-like

uncharacterized LOC107823440

uncharacterized LOC107766820

uncharacterized LOC107782029

uncharacterized LOC4326656

uncharacterized LOC4324172

CTP synthase

ustilago maydis induced8

CTP synthase

CTP synthase-like

CTP synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	4
ghi01232	Nucleotide metabolism	4
ghi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	4
ghi01232	Nucleotide metabolism	4
ghi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00052	Galactose metabolism	2
ath00053	Ascorbate and aldarate metabolism	2
ath00562	Inositol phosphate metabolism	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	4
bna01232	Nucleotide metabolism	4
bna01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01232	Nucleotide metabolism	2
cit00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00052	Galactose metabolism	3
gma00240	Pyrimidine metabolism	3
gma01232	Nucleotide metabolism	3
gma01240	Biosynthesis of cofactors	3
gma00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01232	Nucleotide metabolism	5
gma01240	Biosynthesis of cofactors	5
gma00240	Pyrimidine metabolism	3
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	7
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	3
ppo03013	Nucleocytoplasmic transport	2
ppo00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	3
ppo01230	Biosynthesis of amino acids	3
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00561	Glycerolipid metabolism	2
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2
mtr00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	3
mtr01232	Nucleotide metabolism	3
mtr01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	8
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot04120	Ubiquitin mediated proteolysis	2
sot03082	ATP-dependent chromatin remodeling	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00620	Pyruvate metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00280	Valine, leucine and isoleucine degradation	2
osa01200	Carbon metabolism	2
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	4
zma01232	Nucleotide metabolism	4
zma01240	Biosynthesis of cofactors	4
zma00052	Galactose metabolism	2
zma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	6
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	6
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	5
sbi00053	Ascorbate and aldarate metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi00240	Pyrimidine metabolism	2
sbi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	3
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00240	Pyrimidine metabolism	3
cre03030	DNA replication	2
cre03420	Nucleotide excision repair	2
cre01232	Nucleotide metabolism	2
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

107893545

107945267

107917886

827780

839964

103870238

103867409

103853347

106412810

106381609

106377480

102620771

102617170

102615633

100819563

100816167

100778080

100249622

100248684

100248481

7495226

7460661

7477774

11419996

11444287

11423868

101257698

101244545

101247459

102589647

102578541

102597065

107823440

107766820

107782029

4326656

4324172

100281709

100193891

103651612

123183209

123147533

123452239

123451190

123443994

8066360

8084832

8083780

100836868

100834103

100845896

5723215

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	3	3	3	3	3	3	3	3	2	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107949559 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107949559 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**