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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107950516   pentatricopeptide repeat-containing protein At5g47360 
 ghi-r.1   107924159   pentatricopeptide repeat-containing protein At5g47360 
 ghi-r.1   107907906   pentatricopeptide repeat-containing protein At5g47360 
 ath-u.5   AT5G47360   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103827654   pentatricopeptide repeat-containing protein At5g47360 
 bna-r.1   106397133   pentatricopeptide repeat-containing protein At5g47360-like 
 bna-r.1   106407198   pentatricopeptide repeat-containing protein At5g47360-like 
 cit-r.1   102616886   pentatricopeptide repeat-containing protein At5g47360 
 gma-u.5   100776252   pentatricopeptide repeat-containing protein At5g47360-like 
 vvi-u.5   100853058   pentatricopeptide repeat-containing protein At5g47360 
 ppo-u.5   18094591   pentatricopeptide repeat-containing protein At5g47360 
 mtr-u.5   11419259   pentatricopeptide repeat-containing protein At5g47360 
 sly-u.5   101264355   pentatricopeptide repeat-containing protein At5g47360 
 sot-r.1   102603561   pentatricopeptide repeat-containing protein At5g47360 
 nta-r.1   107795155   pentatricopeptide repeat-containing protein At5g47360-like 
 osa-u.5   4332117   pentatricopeptide repeat-containing protein At5g47360 
 zma-u.5   100217071   uncharacterized LOC100217071 
 tae-r.2   123092910   pentatricopeptide repeat-containing protein At5g47360 
 tae-r.2   123098188   pentatricopeptide repeat-containing protein At5g47360 
 hvu-r.1   123449263   pentatricopeptide repeat-containing protein At5g47360-like 
 sbi-r.1   8085271   pentatricopeptide repeat-containing protein At5g47360 

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Top 50 coexpressed genes to 107950516 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107950516 (ghi-r.1 coexpression data)

CoexMap"107950516"


ghiLOC107950516 | Entrez gene ID : 107950516    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016740864.1 [sequence] [blastp]
XP_016740865.1 [sequence] [blastp]
XP_040945561.1 [sequence] [blastp]
XP_040945562.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016740864.1)
chlo 5,  nucl 3,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016740865.1)
cyto 7,  nucl 1,  E.R. 1,  golg 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040945561.1)
cyto 7,  nucl 1,  E.R. 1,  golg 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040945562.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016740864.1)
other 8  (predict for XP_016740865.1)
scret 7,  other 6  (predict for XP_040945561.1)
scret 7,  other 6  (predict for XP_040945562.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107950516
ghi-r.1
for
107924159
ghi-r.1
for
107907906
ath-u.5
for
AT5G47360
bra-r.6
for
103827654
bna-r.1
for
106397133
bna-r.1
for
106407198
cit-r.1
for
102616886
gma-u.5
for
100776252
vvi-u.5
for
100853058
ppo-u.5
for
18094591
mtr-u.5
for
11419259
sly-u.5
for
101264355
sot-r.1
for
102603561
nta-r.1
for
107795155
osa-u.5
for
4332117
zma-u.5
for
100217071
tae-r.2
for
123092910
tae-r.2
for
123098188
hvu-r.1
for
123449263
sbi-r.1
for
8085271


Ortholog ID: 10366
Species ghi ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta osa zma tae tae hvu sbi
Symbol LOC107950516 LOC107924159 LOC107907906 AT5G47360 LOC103827654 LOC106397133 LOC106407198 LOC102616886 LOC100776252 LOC100853058 LOC18094591 LOC11419259 LOC101264355 LOC102603561 LOC107795155 LOC4332117 LOC100217071 LOC123092910 LOC123098188 LOC123449263 LOC8085271
Function* pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360-like pentatricopeptide repeat-containing protein At5g47360-like pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360-like pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360-like pentatricopeptide repeat-containing protein At5g47360 uncharacterized LOC100217071 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360 pentatricopeptide repeat-containing protein At5g47360-like pentatricopeptide repeat-containing protein At5g47360
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot00380 Tryptophan metabolism 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107950516 107924159 107907906 834783 103827654 106397133 106407198 102616886 100776252 100853058 18094591 11419259 101264355 102603561 107795155 4332117 100217071 123092910 123098188 123449263 8085271
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