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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107951542   rRNA-processing protein fcf2 
 ghi-r.1   107910525   rRNA-processing protein fcf2 
 ath-u.5   AT5G30495   Fcf2 pre-rRNA processing protein 
 ath-u.5   AT1G54770   Fcf2 pre-rRNA processing protein 
 bra-r.6   103837310   rRNA-processing protein fcf2 
 bna-r.1   111200867   rRNA-processing protein fcf2 
 bna-r.1   111211535   rRNA-processing protein fcf2-like 
 cit-r.1   102614880   rRNA-processing protein fcf2-like 
 gma-u.5   100793132   rRNA-processing protein fcf2 
 gma-u.5   100785966   rRNA-processing protein fcf2 
 vvi-u.5   100240830   rRNA-processing protein fcf2 
 ppo-u.5   7454269   rRNA-processing protein fcf2 
 ppo-u.5   7496483   rRNA-processing protein fcf2 
 mtr-u.5   11435848   rRNA-processing protein fcf2 
 mtr-u.5   11408252   rRNA-processing protein fcf2 
 sly-u.5   101268685   rRNA-processing protein fcf2 
 sot-r.1   102602630   rRNA-processing protein fcf2-like 
 nta-r.1   107785976   rRNA-processing protein fcf2 
 nta-r.1   107784260   rRNA-processing protein fcf2 
 osa-u.5   4330616   rRNA-processing protein fcf2 
 zma-u.5   100276831   Fcf2 pre-rRNA processing protein 
 zma-u.5   100276488   Fcf2 pre-rRNA processing protein 
 tae-r.2   123138132   rRNA-processing protein fcf2 
 tae-r.2   123128277   rRNA-processing protein fcf2 
 tae-r.2   123145389   rRNA-processing protein fcf2 
 hvu-r.1   123403019   rRNA-processing protein fcf2-like 
 sbi-r.1   8071731   rRNA-processing protein fcf2 
 bdi-r.1   100840529   rRNA-processing protein fcf2 
 cre-r.1   CHLRE_03g194150v5   uncharacterized protein 

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Top 50 coexpressed genes to 107951542 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107951542 (ghi-r.1 coexpression data)

CoexMap"107951542"


ghiLOC107951542 | Entrez gene ID : 107951542    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 1 2 1 2 1 2 2 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (1369 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016742116.1 [sequence] [blastp]
XP_040946379.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_016742116.1)
nucl 6,  cyto 1,  mito 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_040946379.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_016742116.1)
chlo 6  (predict for XP_040946379.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107951542
ghi-r.1
for
107910525
ath-u.5
for
AT5G30495
ath-u.5
for
AT1G54770
bra-r.6
for
103837310
bna-r.1
for
111200867
bna-r.1
for
111211535
cit-r.1
for
102614880
gma-u.5
for
100793132
gma-u.5
for
100785966
vvi-u.5
for
100240830
ppo-u.5
for
7454269
ppo-u.5
for
7496483
mtr-u.5
for
11435848
mtr-u.5
for
11408252
sly-u.5
for
101268685
sot-r.1
for
102602630
nta-r.1
for
107785976
nta-r.1
for
107784260
osa-u.5
for
4330616
zma-u.5
for
100276831
zma-u.5
for
100276488
tae-r.2
for
123138132
tae-r.2
for
123128277
tae-r.2
for
123145389
hvu-r.1
for
123403019
sbi-r.1
for
8071731
bdi-r.1
for
100840529
cre-r.1
for
CHLRE_03g194150v5


Ortholog ID: 7742
Species ghi ghi ath ath bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107951542 LOC107910525 AT5G30495 AT1G54770 LOC103837310 LOC111200867 LOC111211535 LOC102614880 LOC100793132 LOC100785966 LOC100240830 LOC7454269 LOC7496483 LOC11435848 LOC11408252 LOC101268685 LOC102602630 LOC107785976 LOC107784260 LOC4330616 LOC100276831 LOC100276488 LOC123138132 LOC123128277 LOC123145389 LOC123403019 LOC8071731 LOC100840529 CHLRE_03g194150v5
Function* rRNA-processing protein fcf2 rRNA-processing protein fcf2 Fcf2 pre-rRNA processing protein Fcf2 pre-rRNA processing protein rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2-like rRNA-processing protein fcf2-like rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2-like rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 Fcf2 pre-rRNA processing protein Fcf2 pre-rRNA processing protein rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2 rRNA-processing protein fcf2-like rRNA-processing protein fcf2 rRNA-processing protein fcf2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107951542 107910525 833073 841918 103837310 111200867 111211535 102614880 100793132 100785966 100240830 7454269 7496483 11435848 11408252 101268685 102602630 107785976 107784260 4330616 100276831 100276488 123138132 123128277 123145389 123403019 8071731 100840529 5718716
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