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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G17140   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100803535   pentatricopeptide repeat-containing protein At2g17140 
 vvi-u.5   100262264   pentatricopeptide repeat-containing protein At2g17140 
 mtr-u.5   11423830   pentatricopeptide repeat-containing protein At2g17140 
 sly-u.5   101254742   pentatricopeptide repeat-containing protein At2g17140 
 osa-u.5   4328201   pentatricopeptide repeat-containing protein At2g17140 
 zma-u.5   103654960   pentatricopeptide repeat-containing protein At2g17140 

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Top 50 coexpressed genes to AT2G17140 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G17140 (ath-u.5 coexpression data)

CoexMap"107954282"


ghiLOC107954282 | Entrez gene ID : 107954282    
Species ath gma vvi mtr sly osa zma bdi hvu bra cit bna ppo sbi ghi sot nta cre tae
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016745284.1 [sequence] [blastp]
XP_016745285.1 [sequence] [blastp]
XP_016745286.1 [sequence] [blastp]
XP_016745287.1 [sequence] [blastp]
XP_040952557.1 [sequence] [blastp]
XP_040952558.1 [sequence] [blastp]
XP_040952559.1 [sequence] [blastp]
XP_040952560.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 7,  chlo 1,  cyto 1,  cysk 1,  golg 1  (predict for XP_016745284.1)
extr 7,  chlo 1,  cyto 1,  cysk 1,  golg 1  (predict for XP_016745285.1)
nucl 4,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for XP_016745286.1)
cyto 4,  chlo 3,  cyto_nucl 3  (predict for XP_016745287.1)
extr 7,  chlo 1,  cyto 1,  cysk 1,  golg 1  (predict for XP_040952557.1)
extr 7,  chlo 1,  cyto 1,  cysk 1,  golg 1  (predict for XP_040952558.1)
chlo 4,  nucl 3,  cyto 2  (predict for XP_040952559.1)
chlo 4,  cyto 2,  nucl 2,  cyto_E.R. 1,  extr 1,  golg 1  (predict for XP_040952560.1)
Subcellular
localization
TargetP
scret 6,  mito 4  (predict for XP_016745284.1)
scret 6,  mito 4  (predict for XP_016745285.1)
other 8,  scret 3  (predict for XP_016745286.1)
other 8  (predict for XP_016745287.1)
scret 6,  mito 4  (predict for XP_040952557.1)
scret 6,  mito 4  (predict for XP_040952558.1)
other 7  (predict for XP_040952559.1)
other 7  (predict for XP_040952560.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT2G17140
gma-u.5
for
100803535
vvi-u.5
for
100262264
mtr-u.5
for
11423830
sly-u.5
for
101254742
osa-u.5
for
4328201
zma-u.5
for
103654960


Ortholog ID: 10655
Species ghi ath bra bna bna cit gma vvi mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107898529 AT2G17140 LOC103845989 LOC106371118 LOC106368873 LOC102615837 LOC100803535 LOC100262264 LOC11423830 LOC101254742 LOC102587718 LOC107785551 LOC107826937 LOC4328201 LOC103654960 LOC123142442 LOC123136088 LOC123403561 LOC8069928 LOC100834618
Function* pentatricopeptide repeat-containing protein At2g17140 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 uncharacterized LOC107785551 uncharacterized LOC107826937 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140-like pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140-like pentatricopeptide repeat-containing protein At2g17140 pentatricopeptide repeat-containing protein At2g17140
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03018 RNA degradation 3
tae03440 Homologous recombination 3
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
tae04136 Autophagy - other 2
tae04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107898529 816219 103845989 106371118 106368873 102615837 100803535 100262264 11423830 101254742 102587718 107785551 107826937 4328201 103654960 123142442 123136088 123403561 8069928 100834618
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