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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107955289   polyadenylate-binding protein RBP47 
 ath-u.5   RBP47C'   RNA-binding protein 47C' 
 ath-u.5   RBP47A   RNA-binding protein 47A 
 ath-u.5   RBP47C   RNA-binding protein 47C 
 gma-u.5   100801446   polyadenylate-binding protein RBP47C 
 gma-u.5   100818294   polyadenylate-binding protein RBP47B' 
 gma-u.5   100814743   polyadenylate-binding protein RBP45 
 vvi-u.5   100243203   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100258930   polyadenylate-binding protein RBP47 
 vvi-u.5   100250363   polyadenylate-binding protein RBP45 
 ppo-u.5   18095820   polyadenylate-binding protein RBP45C 
 ppo-u.5   18097813   polyadenylate-binding protein RBP47 
 ppo-u.5   18104937   polyadenylate-binding protein RBP47 
 mtr-u.5   11446957   polyadenylate-binding protein RBP47 
 mtr-u.5   25482078   polyadenylate-binding protein RBP47C 
 mtr-u.5   11432878   polyadenylate-binding protein RBP47C 
 sly-u.5   101247965   polyadenylate-binding protein RBP47 
 sly-u.5   101250426   polyadenylate-binding protein RBP45 
 sly-u.5   101251543   polyadenylate-binding protein RBP47B' 
 osa-u.5   4337064   RNA-binding protein L-like 
 osa-u.5   4329718   polyadenylate-binding protein RBP47 
 zma-u.5   100285821   uncharacterized LOC100285821 
 zma-u.5   100382091   Polyadenylate-binding protein RBP45C 
 zma-u.5   100278143   uncharacterized LOC100278143 

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Top 50 coexpressed genes to 107955289 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107955289 (ghi-r.1 coexpression data)

CoexMap"107955289"


ghiLOC107955289 | Entrez gene ID : 107955289    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_040930104.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for XP_040930104.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_040930104.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107955289
ath-u.5
for
RBP47C'
ath-u.5
for
RBP47A
ath-u.5
for
RBP47C
gma-u.5
for
100801446
gma-u.5
for
100818294
gma-u.5
for
100814743
vvi-u.5
for
100243203
vvi-u.5
for
100258930
vvi-u.5
for
100250363
ppo-u.5
for
18095820
ppo-u.5
for
18097813
ppo-u.5
for
18104937
mtr-u.5
for
11446957
mtr-u.5
for
25482078
mtr-u.5
for
11432878
sly-u.5
for
101247965
sly-u.5
for
101250426
sly-u.5
for
101251543
osa-u.5
for
4337064
osa-u.5
for
4329718
zma-u.5
for
100285821
zma-u.5
for
100382091
zma-u.5
for
100278143


Ortholog ID: 192
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107920130 LOC107942660 AT5G19350 RBP45B LOC103869491 LOC103839291 LOC125609228 LOC125584144 LOC102613263 LOC102608432 LOC100801562 LOC100785454 LOC100243203 LOC18104937 LOC18097813 LOC25486138 LOC25482078 LOC101255948 LOC101254975 LOC102590727 LOC102595348 LOC107774489 LOC107827228 LOC4331788 LOC4344847 LOC103628560 LOC103653663 LOC123052545 LOC123104011 LOC123426861 LOC123427909 LOC8066818 LOC8063033 LOC100845432 LOC100831361 CHLRE_16g652900v5
Function* polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47A-like polyadenylate-binding protein RBP47B'-like polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' RNA-binding protein L-like polyadenylate-binding protein RBP47A polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47-like RNA-binding protein L-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47C' uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107920130 107942660 832055 837708 103869491 103839291 125609228 125584144 102613263 102608432 100801562 100785454 100243203 18104937 18097813 25486138 25482078 101255948 101254975 102590727 102595348 107774489 107827228 4331788 4344847 103628560 103653663 123052545 123104011 123426861 123427909 8066818 8063033 100845432 100831361 66056515
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