ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107957152	uncharacterized LOC107957152
ghi-r.1	121230466	uncharacterized LOC121230466
ghi-r.1	107905277	uncharacterized LOC107905277
ghi-r.1	107899439	uncharacterized LOC107899439
ath-u.5	AT3G09670	Tudor/PWWP/MBT superfamily protein
ath-u.5	AT5G02950	Tudor/PWWP/MBT superfamily protein
bra-r.6	103859286	uncharacterized LOC103859286
bna-r.1	125581362	PWWP domain-containing protein 5-like
bna-r.1	106388963	PWWP domain-containing protein 2
bna-r.1	106424082	PWWP domain-containing protein 5
cit-r.1	102624524	uncharacterized LOC102624524
cit-r.1	102623259	PWWP domain-containing protein 5-like
gma-u.5	100784689	uncharacterized LOC100784689
gma-u.5	100813734	uncharacterized LOC100813734
gma-u.5	102668677	uncharacterized LOC102668677
vvi-u.5	104880050	PWWP domain-containing protein 5
vvi-u.5	100852955	uncharacterized LOC100852955
ppo-u.5	7467605	PWWP domain-containing protein 2
ppo-u.5	7469767	uncharacterized LOC7469767
ppo-u.5	7489624	uncharacterized LOC7489624
mtr-u.5	25491880	uncharacterized LOC25491880
mtr-u.5	25486693	uncharacterized LOC25486693
sly-u.5	101257296	PWWP domain-containing protein 5
sly-u.5	101249817	uncharacterized LOC101249817
sot-r.1	102582027	uncharacterized LOC102582027
sot-r.1	102601545	uncharacterized LOC102601545
nta-r.1	107812444	uncharacterized LOC107812444
nta-r.1	107777668	PWWP domain-containing protein 5-like
nta-r.1	107810021	uncharacterized LOC107810021
osa-u.5	9268510	PWWP domain-containing protein 2
osa-u.5	4339033	PWWP domain-containing protein 3
zma-u.5	103630441	Putative PWWP domain family protein
zma-u.5	103635772	uncharacterized LOC103635772
tae-r.2	123136293	uncharacterized LOC123136293
tae-r.2	123059349	uncharacterized LOC123059349
tae-r.2	123059389	uncharacterized LOC123059389
hvu-r.1	123445247	uncharacterized LOC123445247
hvu-r.1	123414765	uncharacterized LOC123414765
sbi-r.1	8061783	uncharacterized LOC8061783
bdi-r.1	100832128	uncharacterized LOC100832128

Top 50 coexpressed genes to 107957152 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107957152 (ghi-r.1 coexpression data)

CoexMap"107957152"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016748082.2 [sequence] [blastp]
XP_016748083.2 [sequence] [blastp]
XP_016748084.2 [sequence] [blastp]
XP_016748085.2 [sequence] [blastp]
XP_040968497.1 [sequence] [blastp]
XP_040968498.1 [sequence] [blastp]
XP_040968499.1 [sequence] [blastp]
XP_040968500.1 [sequence] [blastp]
XP_040968501.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1	(predict for XP_016748082.2)
nucl 9, chlo 1	(predict for XP_016748083.2)
nucl 9, chlo 1	(predict for XP_016748084.2)
nucl 9, chlo 1	(predict for XP_016748085.2)
nucl 9, chlo 1	(predict for XP_040968497.1)
nucl 9, chlo 1	(predict for XP_040968498.1)
nucl 9, chlo 1	(predict for XP_040968499.1)
nucl 9, chlo 1	(predict for XP_040968500.1)
nucl 9, chlo 1	(predict for XP_040968501.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016748082.2)
other 8	(predict for XP_016748083.2)
other 8	(predict for XP_016748084.2)
other 8	(predict for XP_016748085.2)
other 8	(predict for XP_040968497.1)
other 8	(predict for XP_040968498.1)
other 8	(predict for XP_040968499.1)
other 8	(predict for XP_040968500.1)
other 8	(predict for XP_040968501.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107957152	ghi-r.1 for 121230466	ghi-r.1 for 107905277	ghi-r.1 for 107899439	ath-u.5 for AT3G09670	ath-u.5 for AT5G02950	bra-r.6 for 103859286	bna-r.1 for 125581362	bna-r.1 for 106388963	bna-r.1 for 106424082	cit-r.1 for 102624524	cit-r.1 for 102623259	gma-u.5 for 100784689	gma-u.5 for 100813734	gma-u.5 for 102668677	vvi-u.5 for 104880050	vvi-u.5 for 100852955	ppo-u.5 for 7467605	ppo-u.5 for 7469767	ppo-u.5 for 7489624	mtr-u.5 for 25491880	mtr-u.5 for 25486693	sly-u.5 for 101257296	sly-u.5 for 101249817	sot-r.1 for 102582027	sot-r.1 for 102601545	nta-r.1 for 107812444	nta-r.1 for 107777668	nta-r.1 for 107810021	osa-u.5 for 9268510	osa-u.5 for 4339033	zma-u.5 for 103630441	zma-u.5 for 103635772	tae-r.2 for 123136293	tae-r.2 for 123059349	tae-r.2 for 123059389	hvu-r.1 for 123445247	hvu-r.1 for 123414765	sbi-r.1 for 8061783	bdi-r.1 for 100832128

Ortholog

Ortholog ID: 2719

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC121230466

uncharacterized LOC107899439

uncharacterized LOC107899434

Tudor/PWWP/MBT superfamily protein

uncharacterized LOC103859286

PWWP domain-containing protein 5-like

PWWP domain-containing protein 5

PWWP domain-containing protein 2

uncharacterized LOC102624524

PWWP domain-containing protein 5-like

uncharacterized LOC100784689

uncharacterized LOC102668677

uncharacterized LOC102661771

PWWP domain-containing protein 5

uncharacterized LOC100852955

PWWP domain-containing protein 2

uncharacterized LOC7489624

PWWP domain-containing protein 5

uncharacterized LOC25486693

uncharacterized LOC25484045

uncharacterized LOC11426623

PWWP domain-containing protein 5

uncharacterized LOC101249817

uncharacterized LOC102582027

uncharacterized LOC102601545

uncharacterized LOC107812444

PWWP domain-containing protein 5-like

PWWP domain-containing protein 2

PWWP domain-containing protein 3

Putative PWWP domain family protein

uncharacterized LOC103635772

uncharacterized LOC123136293

uncharacterized LOC123059349

uncharacterized LOC123059389

uncharacterized LOC123445247

uncharacterized LOC123414765

uncharacterized LOC8061783

uncharacterized LOC100832128

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03082	ATP-dependent chromatin remodeling	4
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00860	Porphyrin metabolism	4
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	4
tae00970	Aminoacyl-tRNA biosynthesis	4
tae01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

121230466

107899439

107899434

820124

831728

103859286

125581362

106424082

106439189

102624524

102623259

100784689

102668677

102661771

104880050

100852955

7467605

7489624

18100232

25486693

25484045

11426623

101257296

101249817

102582027

102601545

107812444

107777668

107819437

9268510

4339033

103630441

103635772

123136293

123059349

123059389

123445247

123414765

8061783

100832128

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	3	2	3	2	3	2	2	2	3	2	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107957152 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107957152 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**