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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107959784   transcription factor GTE4 
 ath-u.5   GTE7   global transcription factor group E7 
 ath-u.5   GTE4   global transcription factor group E4 
 gma-u.5   100819363   transcription factor GTE7 
 gma-u.5   100802622   transcription factor GTE7 
 gma-u.5   100817007   transcription factor GTE4 
 vvi-u.5   100255658   transcription factor GTE4 
 vvi-u.5   100264393   transcription factor GTE4 
 ppo-u.5   7467458   transcription factor GTE4 
 ppo-u.5   7478691   transcription factor GTE7 
 ppo-u.5   7478773   transcription factor GTE7 
 mtr-u.5   25487764   transcription factor GTE4 
 mtr-u.5   11409064   transcription factor GTE4 
 mtr-u.5   11407222   transcription factor GTE7 
 sly-u.5   543627   PSTVd RNA-binding protein Virp1d 
 sly-u.5   101264139   transcription factor GTE3, chloroplastic-like 
 sly-u.5   101244421   transcription factor GTE4 
 osa-u.5   4325254   transcription factor GTE3, chloroplastic 
 osa-u.5   4328885   transcription factor GTE4 
 zma-u.5   103654735   transcription factor GTE4 
 zma-u.5   100274451   uncharacterized LOC100274451 
 zma-u.5   103626987   transcription factor GTE4 

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Top 50 coexpressed genes to 107959784 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107959784 (ghi-r.1 coexpression data)

CoexMap"107959784"


ghiLOC107959784 | Entrez gene ID : 107959784    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 2 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016751417.2 [sequence] [blastp]
XP_016751418.2 [sequence] [blastp]
XP_016751419.2 [sequence] [blastp]
XP_040970277.1 [sequence] [blastp]
XP_040970278.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016751417.2)
nucl 10  (predict for XP_016751418.2)
nucl 10  (predict for XP_016751419.2)
nucl 10  (predict for XP_040970277.1)
nucl 10  (predict for XP_040970278.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_016751417.2)
other 8,  chlo 3  (predict for XP_016751418.2)
other 8,  chlo 3  (predict for XP_016751419.2)
other 8,  chlo 3  (predict for XP_040970277.1)
other 8,  chlo 3  (predict for XP_040970278.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107959784
ath-u.5
for
GTE7
ath-u.5
for
GTE4
gma-u.5
for
100819363
gma-u.5
for
100802622
gma-u.5
for
100817007
vvi-u.5
for
100255658
vvi-u.5
for
100264393
ppo-u.5
for
7467458
ppo-u.5
for
7478691
ppo-u.5
for
7478773
mtr-u.5
for
25487764
mtr-u.5
for
11409064
mtr-u.5
for
11407222
sly-u.5
for
543627
sly-u.5
for
101264139
sly-u.5
for
101244421
osa-u.5
for
4325254
osa-u.5
for
4328885
zma-u.5
for
103654735
zma-u.5
for
100274451
zma-u.5
for
103626987


Ortholog ID: 768
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107928883 LOC107917954 GTE4 GTE7 LOC103855876 LOC103852827 LOC106365706 LOC106399515 LOC102616325 LOC102625848 LOC100802622 LOC100817007 LOC100245782 LOC7487584 LOC7478691 LOC11407221 LOC11407222 LOC101244421 LOC101264139 LOC102601488 LOC102587679 LOC107791115 LOC107767882 LOC4325254 LOC4328885 LOC100274451 LOC103649581 LOC123144460 LOC123069218 LOC123406381 LOC123443142 LOC8081417 LOC8078332 LOC100845401 LOC100830810 CHLRE_08g367300v5
Function* transcription factor GTE7 transcription factor GTE4 global transcription factor group E4 global transcription factor group E7 transcription factor GTE2 transcription factor GTE3, chloroplastic transcription factor GTE4 transcription factor GTE3, chloroplastic transcription factor GTE2-like transcription factor GTE2 transcription factor GTE7 transcription factor GTE4 transcription factor GTE7 transcription factor GTE4 transcription factor GTE7 transcription factor GTE7 transcription factor GTE7 transcription factor GTE4 transcription factor GTE3, chloroplastic-like transcription factor GTE4-like transcription factor GTE4 transcription factor GTE4 transcription factor GTE4-like transcription factor GTE3, chloroplastic transcription factor GTE4 uncharacterized LOC100274451 uncharacterized LOC103649581 transcription factor GTE4 transcription factor GTE3, chloroplastic transcription factor GTE4-like transcription factor GTE5, chloroplastic-like transcription factor GTE4 transcription factor GTE4 transcription factor GTE4 transcription factor GTE4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 4
gma03082 ATP-dependent chromatin remodeling 3
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae04148 Efferocytosis 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi00510 N-Glycan biosynthesis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107928883 107917954 837133 836689 103855876 103852827 106365706 106399515 102616325 102625848 100802622 100817007 100245782 7487584 7478691 11407221 11407222 101244421 101264139 102601488 102587679 107791115 107767882 4325254 4328885 100274451 103649581 123144460 123069218 123406381 123443142 8081417 8078332 100845401 100830810 5721686
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