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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107960130   protein LSD1 
 ghi-r.1   121211098   protein LOL1 
 ghi-r.1   107887496   protein LSD1 
 ghi-r.1   107906327   protein LSD1 
 ath-u.5   LSD1   LSD1 zinc finger family protein 
 ath-u.5   LOL1   lsd one like 1 
 bra-r.6   103834161   protein LSD1 
 bra-r.6   103874754   protein LOL1 
 bna-r.1   106360767   protein LSD1 
 bna-r.1   106366989   protein LSD1-like 
 cit-r.1   102618163   protein LOL1 
 gma-u.5   100306356   uncharacterized LOC100306356 
 gma-u.5   100799843   protein LOL1 
 gma-u.5   100792570   protein LSD1 
 vvi-u.5   100243854   protein LOL1 
 vvi-u.5   100242577   protein LSD1 
 ppo-u.5   7490691   protein LSD1 
 ppo-u.5   18094183   protein LOL1 
 ppo-u.5   18096957   protein LOL1 
 mtr-u.5   25486678   protein LSD1 
 mtr-u.5   11427425   protein LSD1 
 mtr-u.5   11409342   protein LOL1 
 sly-u.5   LOL1   protein LOL1 
 sly-u.5   101265799   protein LSD1 
 sot-r.1   102593263   protein LOL1 
 sot-r.1   LSD1   protein LSD1 
 sot-r.1   102606168   protein LSD1-like 
 nta-r.1   107771822   protein LOL1 
 nta-r.1   107792475   protein LSD1-like 
 nta-r.1   107819003   protein LSD1 
 osa-u.5   4344713   protein LSD1-like 
 osa-u.5   107279219   uncharacterized LOC107279219 
 osa-u.5   4352767   protein LOL2-like 
 zma-u.5   100285990   uncharacterized LOC100285990 
 zma-u.5   100285579   uncharacterized LOC100285579 
 zma-u.5   100194364   uncharacterized LOC100194364 
 tae-r.2   123135520   protein LSD1 
 tae-r.2   123111814   protein LSD1 
 tae-r.2   123122737   protein LOL3 
 hvu-r.1   123452126   protein LOL3-like 
 hvu-r.1   123445791   protein LSD1 
 hvu-r.1   123395547   protein LOL2-like 
 sbi-r.1   8076679   protein LOL2 
 sbi-r.1   8057253   protein LOL3 
 sbi-r.1   8069635   protein LSD1 
 bdi-r.1   100837007   protein LOL2 
 bdi-r.1   100844237   protein LOL3 
 bdi-r.1   100835743   protein LSD1 
 cre-r.1   CHLRE_12g517350v5   uncharacterized protein 

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Top 50 coexpressed genes to 107960130 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107960130 (ghi-r.1 coexpression data)

CoexMap"107960130"


ghiLOC107960130 | Entrez gene ID : 107960130    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 1 3 2 3 3 2 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_016751885.2 [sequence] [blastp]
XP_016751886.2 [sequence] [blastp]
XP_040972418.1 [sequence] [blastp]
XP_040972419.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016751885.2)
chlo 9  (predict for XP_016751886.2)
chlo 10  (predict for XP_040972418.1)
chlo 10  (predict for XP_040972419.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_016751885.2)
chlo 2  (predict for XP_016751886.2)
chlo 2  (predict for XP_040972418.1)
chlo 2  (predict for XP_040972419.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107960130
ghi-r.1
for
121211098
ghi-r.1
for
107887496
ghi-r.1
for
107906327
ath-u.5
for
LSD1
ath-u.5
for
LOL1
bra-r.6
for
103834161
bra-r.6
for
103874754
bna-r.1
for
106360767
bna-r.1
for
106366989
cit-r.1
for
102618163
gma-u.5
for
100306356
gma-u.5
for
100799843
gma-u.5
for
100792570
vvi-u.5
for
100243854
vvi-u.5
for
100242577
ppo-u.5
for
7490691
ppo-u.5
for
18094183
ppo-u.5
for
18096957
mtr-u.5
for
25486678
mtr-u.5
for
11427425
mtr-u.5
for
11409342
sly-u.5
for
LOL1
sly-u.5
for
101265799
sot-r.1
for
102593263
sot-r.1
for
LSD1
sot-r.1
for
102606168
nta-r.1
for
107771822
nta-r.1
for
107792475
nta-r.1
for
107819003
osa-u.5
for
4344713
osa-u.5
for
107279219
osa-u.5
for
4352767
zma-u.5
for
100285990
zma-u.5
for
100285579
zma-u.5
for
100194364
tae-r.2
for
123135520
tae-r.2
for
123111814
tae-r.2
for
123122737
hvu-r.1
for
123452126
hvu-r.1
for
123445791
hvu-r.1
for
123395547
sbi-r.1
for
8076679
sbi-r.1
for
8057253
sbi-r.1
for
8069635
bdi-r.1
for
100837007
bdi-r.1
for
100844237
bdi-r.1
for
100835743
cre-r.1
for
CHLRE_12g517350v5


Ortholog ID: 1353
Species ghi ghi ghi ath ath bra bra bra bna bna cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107906327 LOC107941151 LOC107930372 LSD1 LOL1 LOC103834161 LOC103874754 LOC103858192 LOC106366989 LOC106445609 LOC102618163 LOC100799843 LOC100788563 LOC100527656 LOC100243854 LOC100242577 LOC7490691 LOC18094183 LOC18096957 LOC25486678 LOC11427425 LOC11409342 LOL1 LOC101265799 LOC102593263 LSD1 LOC102606168 LOC107792475 LOC107827827 LOC142181204 LOC4344713 LOC107279219 LOC4343203 LOC100285990 LOC100285579 LOC100194364 LOC123102232 LOC123113228 LOC100125715 LOC123452126 LOC123445791 LOC123395547 LOC8076679 LOC8057253 LOC8069635 LOC100837007 LOC100844237 LOC100835743 CHLRE_12g517350v5
Function* protein LSD1 protein LSD1 protein LSD1 LSD1 zinc finger family protein lsd one like 1 protein LSD1 protein LOL1 protein LSD1 protein LSD1-like protein LOL1 protein LOL1 protein LOL1 protein LOL1 uncharacterized LOC100527656 protein LOL1 protein LSD1 protein LSD1 protein LOL1 protein LOL1 protein LSD1 protein LSD1 protein LOL1 protein LOL1 protein LSD1 protein LOL1 protein LSD1 protein LSD1-like protein LSD1-like protein LOL2 protein LOL1 protein LSD1-like uncharacterized LOC107279219 protein LOL1-like uncharacterized LOC100285990 uncharacterized LOC100285579 uncharacterized LOC100194364 protein LOL2 protein LOL3 protein LSD1 protein LOL3-like protein LSD1 protein LOL2-like protein LOL2 protein LOL3 protein LSD1 protein LOL2 protein LOL3 protein LSD1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 8
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00450 Selenocompound metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04145 Phagosome 3
sot04517 IgSF CAM signaling 3
sot04814 Motor proteins 3
sot04142 Lysosome 2
sot04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 4
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 5
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 3
zma00240 Pyrimidine metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 5
tae04626 Plant-pathogen interaction 3
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 4
tae00561 Glycerolipid metabolism 3
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 4
sbi00710 Carbon fixation by Calvin cycle 3
sbi00196 Photosynthesis - antenna proteins 3
sbi00195 Photosynthesis 2
sbi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906327 107941151 107930372 827786 840148 103834161 103874754 103858192 106366989 106445609 102618163 100799843 100788563 100527656 100243854 100242577 7490691 18094183 18096957 25486678 11427425 11409342 101265355 101265799 102593263 102606105 102606168 107792475 107827827 142181204 4344713 107279219 4343203 100285990 100285579 100194364 123102232 123113228 100125715 123452126 123445791 123395547 8076679 8057253 8069635 100837007 100844237 100835743 5722642
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