ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107960240	protein transport protein Sec61 subunit alpha
ghi-r.1	107960445	protein transport protein Sec61 subunit alpha
ghi-r.1	107924102	protein transport protein Sec61 subunit alpha
ghi-r.1	107905829	protein transport protein Sec61 subunit alpha
ath-u.5	AT2G34250	SecY protein transport family protein
ath-u.5	AT1G29310	SecY protein transport family protein
bra-r.6	103840500	protein transport protein Sec61 subunit alpha
bra-r.6	103865320	protein transport protein Sec61 subunit alpha
bna-r.1	106447507	protein transport protein Sec61 subunit alpha-like
bna-r.1	106367405	protein transport protein Sec61 subunit alpha
bna-r.1	106406107	protein transport protein Sec61 subunit alpha-like
cit-r.1	102609105	uncharacterized LOC102609105
cit-r.1	102625854	uncharacterized LOC102625854
gma-u.5	100795147	protein transport protein Sec61 subunit alpha
gma-u.5	100817566	protein transport protein Sec61 subunit alpha
gma-u.5	100809703	protein transport protein Sec61 subunit alpha
vvi-u.5	100250458	uncharacterized LOC100250458
vvi-u.5	100854110	uncharacterized LOC100854110
ppo-u.5	7472340	uncharacterized LOC7472340
ppo-u.5	18095452	uncharacterized LOC18095452
mtr-u.5	11408264	protein transport protein Sec61 subunit alpha
mtr-u.5	11408450	protein transport protein Sec61 subunit alpha
sly-u.5	101259292	uncharacterized LOC101259292
sly-u.5	101245021	uncharacterized LOC101245021
sot-r.1	102596929	protein transport protein Sec61 subunit alpha-like
sot-r.1	102582241	protein transport protein Sec61 subunit alpha
nta-r.1	107804300	uncharacterized LOC107804300
nta-r.1	107792495	uncharacterized LOC107792495
nta-r.1	107807662	uncharacterized LOC107807662
osa-u.5	4332042	uncharacterized LOC4332042
osa-u.5	4346809	uncharacterized LOC4346809
osa-u.5	4346811	uncharacterized LOC4346811
zma-u.5	100217058	SecY protein transport family protein
zma-u.5	100276798	SecY protein transport family protein
zma-u.5	100280289	uncharacterized LOC100280289
tae-r.2	123103542	protein transport protein Sec61 subunit alpha
tae-r.2	123111756	protein transport protein Sec61 subunit alpha
hvu-r.1	123444169	protein transport protein Sec61 subunit alpha-like
hvu-r.1	123452593	protein transport protein Sec61 subunit alpha-like
sbi-r.1	110430079	protein transport protein Sec61 subunit alpha-like
bdi-r.1	100836804	protein transport protein Sec61 subunit alpha
bdi-r.1	100830668	protein transport protein Sec61 subunit alpha
cre-r.1	CHLRE_03g171350v5	uncharacterized protein

Top 50 coexpressed genes to 107960240 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107960240 (ghi-r.1 coexpression data)

CoexMap"107960240"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03060 [list] [network] Protein export (151 genes)

ghi04141 [list] [network] Protein processing in endoplasmic reticulum (593 genes)

ghi04145 [list] [network] Phagosome (280 genes)

GO BP

GO:0006616 [list] [network] SRP-dependent cotranslational protein targeting to membrane, translocation	(27 genes)	IEA
GO:0031204 [list] [network] post-translational protein targeting to membrane, translocation	(33 genes)	IEA

GO CC

GO:0005784 [list] [network] Sec61 translocon complex	(21 genes)	IEA
GO:0016020 [list] [network] membrane	(8195 genes)	IEA

GO MF

GO:0008320 [list] [network] protein transmembrane transporter activity	(76 genes)	IEA
GO:0043022 [list] [network] ribosome binding	(137 genes)	IEA
GO:0005048 [list] [network] signal sequence binding	(163 genes)	IEA

Protein

XP_016752028.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, vacu 1, E.R. 1, E.R._vacu 1

(predict for XP_016752028.1)

Subcellular
localization
TargetP

mito 7, other 6

(predict for XP_016752028.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107960240	ghi-r.1 for 107960445	ghi-r.1 for 107924102	ghi-r.1 for 107905829	ath-u.5 for AT2G34250	ath-u.5 for AT1G29310	bra-r.6 for 103840500	bra-r.6 for 103865320	bna-r.1 for 106447507	bna-r.1 for 106367405	bna-r.1 for 106406107	cit-r.1 for 102609105	cit-r.1 for 102625854	gma-u.5 for 100795147	gma-u.5 for 100817566	gma-u.5 for 100809703	vvi-u.5 for 100250458	vvi-u.5 for 100854110	ppo-u.5 for 7472340	ppo-u.5 for 18095452	mtr-u.5 for 11408264	mtr-u.5 for 11408450	sly-u.5 for 101259292	sly-u.5 for 101245021	sot-r.1 for 102596929	sot-r.1 for 102582241	nta-r.1 for 107804300	nta-r.1 for 107792495	nta-r.1 for 107807662	osa-u.5 for 4332042	osa-u.5 for 4346809	osa-u.5 for 4346811	zma-u.5 for 100217058	zma-u.5 for 100276798	zma-u.5 for 100280289	tae-r.2 for 123103542	tae-r.2 for 123111756	hvu-r.1 for 123444169	hvu-r.1 for 123452593	sbi-r.1 for 110430079	bdi-r.1 for 100836804	bdi-r.1 for 100830668	cre-r.1 for CHLRE_03g171350v5

Ortholog

Ortholog ID: 2134

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein transport protein Sec61 subunit alpha

SecY protein transport family protein

protein transport protein Sec61 subunit alpha

protein transport protein Sec61 subunit alpha-like

uncharacterized LOC102609105

uncharacterized LOC102625854

protein transport protein Sec61 subunit alpha

protein transport protein Sec61 subunit alpha-like

uncharacterized LOC100250458

uncharacterized LOC100854110

uncharacterized LOC7472340

uncharacterized LOC18095452

protein transport protein Sec61 subunit alpha

uncharacterized LOC101259292

uncharacterized LOC101245021

protein transport protein Sec61 subunit alpha-like

protein transport protein Sec61 subunit alpha

uncharacterized LOC107804300

uncharacterized LOC107792495

uncharacterized LOC107807662

uncharacterized LOC4332042

uncharacterized LOC4346809

SecY protein transport family protein

uncharacterized LOC100280289

protein transport protein Sec61 subunit alpha

protein transport protein Sec61 subunit alpha-like

protein transport protein Sec61 subunit alpha

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	5
ghi04145	Phagosome	5
ghi03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	5
ghi04145	Phagosome	5
ghi03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	5
ghi04145	Phagosome	5
ghi03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	14
ath04145	Phagosome	7
ath03060	Protein export	6
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	13
ath04145	Phagosome	5
ath03060	Protein export	4
ath00510	N-Glycan biosynthesis	2
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	10
bra03060	Protein export	4
bra00510	N-Glycan biosynthesis	4
bra00513	Various types of N-glycan biosynthesis	4
bra01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	7
bna04141	Protein processing in endoplasmic reticulum	6
bna04145	Phagosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	7
bna04141	Protein processing in endoplasmic reticulum	6
bna04145	Phagosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04144	Endocytosis	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04142	Lysosome	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	11
gma04145	Phagosome	6
gma03060	Protein export	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	19
gma03060	Protein export	8
gma04145	Phagosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	14
gma03060	Protein export	7
gma04145	Phagosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi04141	Protein processing in endoplasmic reticulum	5
vvi00020	Citrate cycle (TCA cycle)	4
vvi00513	Various types of N-glycan biosynthesis	4
vvi00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	6
ppo00190	Oxidative phosphorylation	3
ppo03060	Protein export	3
ppo03013	Nucleocytoplasmic transport	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	14
ppo04145	Phagosome	5
ppo03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	15
mtr04145	Phagosome	5
mtr03060	Protein export	3
mtr00510	N-Glycan biosynthesis	3
mtr00513	Various types of N-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	11
mtr03060	Protein export	5
mtr04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	11
sly03060	Protein export	5
sly04145	Phagosome	3
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	10
sly04145	Phagosome	5
sly03060	Protein export	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	13
sot04145	Phagosome	6
sot03060	Protein export	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	14
sot04145	Phagosome	6
sot03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	10
nta03060	Protein export	2
nta04145	Phagosome	2
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	7
nta03060	Protein export	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	13
osa03060	Protein export	6
osa04145	Phagosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	8
osa03060	Protein export	5
osa04145	Phagosome	4
osa03015	mRNA surveillance pathway	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma04141	Protein processing in endoplasmic reticulum	3
zma03060	Protein export	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6
zma03060	Protein export	4
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	14
tae04145	Phagosome	10
tae03060	Protein export	5
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	14
tae04145	Phagosome	10
tae03060	Protein export	7
tae00520	Amino sugar and nucleotide sugar metabolism	4
tae01250	Biosynthesis of nucleotide sugars	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	9
tae03060	Protein export	3
tae04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	9
hvu04145	Phagosome	5
hvu03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	9
hvu03060	Protein export	4
hvu04145	Phagosome	3
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	7
sbi03050	Proteasome	3
sbi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	9
bdi00510	N-Glycan biosynthesis	4
bdi00513	Various types of N-glycan biosynthesis	4
bdi03060	Protein export	3
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	8
bdi00510	N-Glycan biosynthesis	3
bdi00513	Various types of N-glycan biosynthesis	3
bdi03060	Protein export	3
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	6
cre03060	Protein export	3
cre04145	Phagosome	3

Expression

Expression pattern

Entrez Gene ID^*

107960445

107905829

121218683

817986

839805

103857525

106423080

106432790

102609105

102625854

100795147

100817566

100798372

100250458

100854110

7472340

18095452

11408264

11408450

101259292

101245021

102596929

102582241

107804300

107792495

107807662

4332042

4346809

100217058

100276798

100280289

123103542

123111756

123085068

123444169

123452593

110430079

100836804

100830668

5728930

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	2	3	2	2	2	2	2	3	3	3	2	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107960240 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107960240 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**