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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107963941   putative pentatricopeptide repeat-containing protein At5g59900 
 ath-u.5   AT5G59900   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100797093   putative pentatricopeptide repeat-containing protein At5g59900 
 gma-u.5   102664565   putative pentatricopeptide repeat-containing protein At5g59900 
 vvi-u.5   100263886   putative pentatricopeptide repeat-containing protein At5g59900 
 ppo-u.5   7465126   putative pentatricopeptide repeat-containing protein At5g59900 
 mtr-u.5   11441177   putative pentatricopeptide repeat-containing protein At5g59900 
 sly-u.5   101268449   putative pentatricopeptide repeat-containing protein At5g59900 

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Top 50 coexpressed genes to 107963941 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107963941 (ghi-r.1 coexpression data)

CoexMap"107963941"


ghiLOC107963941 | Entrez gene ID : 107963941    
Species ghi ath gma vvi ppo mtr sly sbi nta bra osa cre cit hvu bdi sot zma tae bna
Paralog 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016755986.2 [sequence] [blastp]
XP_040963319.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for XP_016755986.2)
cyto 4,  chlo_mito 3,  chlo 2,  mito 2,  cyto_nucl 2  (predict for XP_040963319.1)
Subcellular
localization
TargetP
other 3  (predict for XP_016755986.2)
mito 8,  scret 5  (predict for XP_040963319.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107963941

.
ath-u.5
for
AT5G59900

.
gma-u.5
for
100797093

.
gma-u.5
for
102664565

.
vvi-u.5
for
100263886

.
ppo-u.5
for
7465126

.
mtr-u.5
for
11441177

.
sly-u.5
for
101268449

.


Ortholog ID: 13202
Species ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol AT5G59900 LOC102664565 LOC100797093 LOC101268449 LOC103845412 LOC100263886 LOC7465126 LOC11441177 LOC107963941 LOC107950273 LOC106418362 LOC106415830 LOC102591090 LOC102628281 LOC107819597 LOC107791456
Function* Pentatricopeptide repeat (PPR) superfamily protein putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 putative pentatricopeptide repeat-containing protein At5g59900 uncharacterized LOC107819597 uncharacterized LOC107791456
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836112 102664565 100797093 101268449 103845412 100263886 7465126 11441177 107963941 107950273 106418362 106415830 102591090 102628281 107819597 107791456
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