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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G25400   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT5G51780   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100780888   transcription factor bHLH118 
 gma-u.5   100795953   transcription factor bHLH118 
 bra-r.6   103832862   transcription factor bHLH36-like 
 bra-r.6   103861555   transcription factor bHLH118 
 mtr-u.5   11415125   transcription factor bHLH118 
 mtr-u.5   25479498   transcription factor bHLH36 
 mtr-u.5   11422874   transcription factor bHLH118 
 ghi-r.1   107890830   transcription factor bHLH126 
 ghi-r.1   107930214   transcription factor bHLH126 
 ghi-r.1   107930987   transcription factor bHLH118 
 cit-r.1   102631004   transcription factor bHLH36 
 sly-u.5   101267867   transcription factor bHLH36-like 
 sly-u.5   101245065   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sot-r.1   102582117   transcription factor bHLH118-like 
 sot-r.1   102584358   transcription factor bHLH36-like 
 nta-r.1   107809088   transcription factor bHLH118-like 
 nta-r.1   107809086   transcription factor bHLH36 
 nta-r.1   107802822   transcription factor bHLH118 

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Top 50 coexpressed genes to AT4G25400 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G25400 (ath-u.5 coexpression data)

CoexMap"109124256"


vviLOC109124256 | Entrez gene ID : 109124256    
Species ath gma bra mtr ghi cit sly sot nta hvu tae sbi vvi zma cre ppo osa bna bdi
Paralog 3 2 2 3 3 1 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (343 genes)  IEA  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription regulator complex  (85 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (217 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (238 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (449 genes)  IEA  
Protein XP_059597860.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 3,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_059597860.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_059597860.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT4G25400
ath-u.5
for
AT4G25410
ath-u.5
for
AT5G51780
gma-u.5
for
100780888
gma-u.5
for
100795953
bra-r.6
for
103832862
bra-r.6
for
103861555
mtr-u.5
for
11415125
mtr-u.5
for
25479498
mtr-u.5
for
11422874
ghi-r.1
for
107890830
ghi-r.1
for
107930214
ghi-r.1
for
107930987
cit-r.1
for
102631004
sly-u.5
for
101267867
sly-u.5
for
101245065
sot-r.1
for
102582117
sot-r.1
for
102584358
nta-r.1
for
107809088
nta-r.1
for
107809086
nta-r.1
for
107802822


Ortholog ID: 2233
Species ath ath ath gma gma bra bra mtr mtr mtr ghi ghi bna cit sly sly sot sot nta
Symbol AT4G25400 AT5G51780 AT5G51790 LOC100795953 LOC100796473 LOC103832862 LOC103861555 LOC11415125 LOC25479498 LOC25479499 LOC107930214 LOC107945011 LOC106379318 LOC102631004 LOC101267867 LOC101245065 LOC102582117 LOC102584358 LOC107809086
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH118 transcription factor bHLH118 transcription factor bHLH36-like transcription factor bHLH118 transcription factor bHLH118 transcription factor bHLH36 transcription factor bHLH118 transcription factor bHLH126 transcription factor bHLH118 transcription factor bHLH36-like transcription factor bHLH36 transcription factor bHLH36-like basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH118-like transcription factor bHLH36-like transcription factor bHLH36
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00592 alpha-Linolenic acid metabolism 6
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 3
bna00010 Glycolysis / Gluconeogenesis 2
bna00350 Tyrosine metabolism 2
bna00620 Pyruvate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 4
sot02010 ABC transporters 2
sot04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828643 835252 835253 100795953 100796473 103832862 103861555 11415125 25479498 25479499 107930214 107945011 106379318 102631004 101267867 101245065 102582117 102584358 107809086
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