ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT4G25400	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT4G25410	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT5G51780	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
gma-u.5	100780888	transcription factor bHLH118
gma-u.5	100795953	transcription factor bHLH118
mtr-u.5	11415125	transcription factor bHLH118
mtr-u.5	25479498	transcription factor bHLH36
mtr-u.5	11422874	transcription factor bHLH118
sly-u.5	101267867	transcription factor bHLH36-like
sly-u.5	101245065	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(343 genes)

IEA

GO CC

GO:0090575 [list] [network] RNA polymerase II transcription regulator complex

(85 genes)

IEA

GO MF

GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(217 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(238 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(449 genes)	IEA

Protein

XP_059597860.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, chlo_mito 4, mito 3, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1

(predict for XP_059597860.1)

Subcellular
localization
TargetP

mito 9

(predict for XP_059597860.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G25400	ath-u.5 for AT4G25410	ath-u.5 for AT5G51780	gma-u.5 for 100780888	gma-u.5 for 100795953	mtr-u.5 for 11415125	mtr-u.5 for 25479498	mtr-u.5 for 11422874	sly-u.5 for 101267867	sly-u.5 for 101245065

Ortholog ID: 2233

Species

ath

gma

bra

mtr

ghi

cit

sly

sot

Symbol

Function^*

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

transcription factor bHLH118

transcription factor bHLH36-like

transcription factor bHLH118

transcription factor bHLH36

transcription factor bHLH118

transcription factor bHLH36

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

transcription factor bHLH36-like

transcription factor bHLH118-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2
sly00941	Flavonoid biosynthesis	2
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04075	Plant hormone signal transduction	4
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

835252

835253

100795953

103832862

103861555

25479498

25479499

107945011

102631004

101245065

101267867

102584358

102582117


Species	ath	gma	mtr	sly	bdi	hvu	bra	vvi	cit	bna	ppo	sbi	ghi	osa	sot	nta	cre	tae	zma
Paralog	3	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G25400 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G25400 (ath-u.5 coexpression data)

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G25400 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G25400 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**