ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	109939171	uncharacterized LOC109939171
zma-r.6	109939171	uncharacterized LOC109939171
zma-u.5	103651496	uncharacterized LOC103651496
zma-u.5	103631680	uncharacterized LOC103631680
sbi-r.1	8054386	uncharacterized LOC8054386
osa-u.5	4326609	uncharacterized LOC4326609
tae-r.2	123061502	uncharacterized LOC123061502
tae-r.2	123070141	nucleolin
tae-r.2	123078577	uncharacterized LOC123078577
hvu-r.1	123443887	uncharacterized LOC123443887
bdi-r.1	100829496	uncharacterized LOC100829496
ath-u.5	AT1G71430	uncharacterized protein
gma-u.5	100792110	uncharacterized LOC100792110
gma-u.5	100781730	uncharacterized LOC100781730
sly-u.5	101255088	uncharacterized LOC101255088
bra-r.6	103852717	uncharacterized protein C12orf45 homolog
bra-r.6	103831665	uncharacterized protein C12orf45 homolog
vvi-u.5	100262735	uncharacterized LOC100262735
vvi-u.5	100259936	uncharacterized LOC100259936
ppo-u.5	18105566	uncharacterized LOC18105566
mtr-u.5	11429050	uncharacterized LOC11429050
mtr-u.5	25481871	uncharacterized LOC25481871
ghi-r.1	107925352	uncharacterized LOC107925352
ghi-r.1	107921226	uncharacterized LOC107921226
ghi-r.1	107921056	uncharacterized LOC107921056
bna-r.1	BNAC06G32540D	NOP protein chaperone 1
bna-r.1	106395999	NOP protein chaperone 1-like
bna-r.1	106354159	NOP protein chaperone 1-like
sot-r.1	107058380	uncharacterized LOC107058380
sot-r.1	102579813	uncharacterized LOC102579813
cit-r.1	102622494	uncharacterized LOC102622494
cit-r.1	112497171	uncharacterized LOC112497171
cit-r.1	102630578	uncharacterized LOC102630578
nta-r.1	107791776	uncharacterized LOC107791776
cre-r.1	CHLRE_03g168500v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000492 [list] [network] box C/D snoRNP assembly

(6 genes)

IEA

GO CC

GO MF

GO:0062064 [list] [network] box C/D methylation guide snoRNP complex binding

(3 genes)

IEA

Protein

XP_008650774.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto_nucl 4, chlo 1, cysk 1

(predict for XP_008650774.1)

Subcellular
localization
TargetP

other 8

(predict for XP_008650774.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 109939171	zma-r.6 for 109939171	zma-u.5 for 103651496	zma-u.5 for 103631680	sbi-r.1 for 8054386	osa-u.5 for 4326609	tae-r.2 for 123061502	tae-r.2 for 123070141	tae-r.2 for 123078577	hvu-r.1 for 123443887	bdi-r.1 for 100829496	ath-u.5 for AT1G71430	gma-u.5 for 100792110	gma-u.5 for 100781730	sly-u.5 for 101255088	bra-r.6 for 103852717	bra-r.6 for 103831665	vvi-u.5 for 100262735	vvi-u.5 for 100259936	ppo-u.5 for 18105566	mtr-u.5 for 11429050	mtr-u.5 for 25481871	ghi-r.1 for 107925352	ghi-r.1 for 107921226	ghi-r.1 for 107921056	bna-r.1 for BNAC06G32540D	bna-r.1 for 106395999	bna-r.1 for 106354159	sot-r.1 for 107058380	sot-r.1 for 102579813	cit-r.1 for 102622494	cit-r.1 for 112497171	cit-r.1 for 102630578	nta-r.1 for 107791776	cre-r.1 for CHLRE_03g168500v5

Ortholog

Ortholog ID: 5431

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC109939171

uncharacterized LOC103651496

uncharacterized LOC103631680

uncharacterized LOC8054386

uncharacterized LOC4326609

uncharacterized LOC123061502

nucleolin

uncharacterized LOC123078577

uncharacterized LOC123443887

uncharacterized LOC100829496

uncharacterized protein

uncharacterized LOC100792110

uncharacterized LOC100781730

uncharacterized LOC101255088

uncharacterized protein C12orf45 homolog

uncharacterized LOC100262735

uncharacterized LOC100259936

uncharacterized LOC18105566

uncharacterized LOC11429050

uncharacterized LOC25481871

uncharacterized LOC107925352

uncharacterized LOC107921226

uncharacterized LOC107921056

NOP protein chaperone 1

NOP protein chaperone 1-like

uncharacterized LOC107058380

uncharacterized LOC102579813

uncharacterized LOC102622494

uncharacterized LOC112497171

uncharacterized LOC127899220

uncharacterized LOC107791776

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03020	RNA polymerase	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03010	Ribosome	3
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	5
bdi03010	Ribosome	4
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00190	Oxidative phosphorylation	3
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi03010	Ribosome	4
ghi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

109939171

103651496

103631680

8054386

4326609

123061502

123070141

123078577

123443887

100829496

843484

100792110

100781730

101255088

103852717

103831665

100262735

100259936

18105566

11429050

25481871

107925352

107921226

107921056

106406570

106395999

106345486

107058380

102579813

102622494

112497171

127899220

107791776

66052820

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 109939171 (zma-u.5 coexpression data)

Top 50 enrichment test to 109939171 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	1	3	1	1	1	2	1	2	2	1	2	3	3	2	3	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 109939171 (zma-u.5 coexpression data)

Top 50 enrichment test to 109939171 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**