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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   109939248   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 zma-r.6   109939248   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 zma-u.5   100285088   RHM1 
 zma-u.5   118473163   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like 
 zma-u.5   sm1   UDP-rhamnose synthase 
 osa-u.5   4332425   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 ath-u.5   RHM3   rhamnose biosynthesis 3 
 ath-u.5   MUM4   NAD-dependent epimerase/dehydratase family protein 
 ath-u.5   RHM1   rhamnose biosynthesis 1 
 gma-u.5   100789909   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 gma-u.5   100810341   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 gma-u.5   100775641   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 sly-u.5   101257808   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 
 sly-u.5   101249663   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 sly-u.5   101248505   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 vvi-u.5   100260586   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 ppo-u.5   18095411   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 ppo-u.5   7470917   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 mtr-u.5   25479851   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 
 mtr-u.5   25487192   trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 

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Top 50 coexpressed genes to 109939248 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 109939248 (zma-u.5 coexpression data)

CoexMap"109939248"


zmaLOC109939248 | Entrez gene ID : 109939248    
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 1 3 3 3 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00541 [list] [network] Biosynthesis of various nucleotide sugars (36 genes)
zma01250 [list] [network] Biosynthesis of nucleotide sugars (117 genes)
GO BP
GO:0009225 [list] [network] nucleotide-sugar metabolic process  (41 genes)  IEA  
GO CC
GO MF
GO:0008460 [list] [network] dTDP-glucose 4,6-dehydratase activity  (5 genes)  IEA  
Protein XP_020401614.1 [sequence] [blastp]
XP_020401619.1 [sequence] [blastp]
XP_035819235.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  cyto 2,  extr 2,  pero 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_020401614.1)
chlo 2,  cyto 2,  extr 2,  pero 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_020401619.1)
chlo 2,  cyto 2,  extr 2,  pero 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_035819235.1)
Subcellular
localization
TargetP
other 7  (predict for XP_020401614.1)
other 7  (predict for XP_020401619.1)
other 7  (predict for XP_035819235.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
109939248
zma-r.6
for
109939248
zma-u.5
for
100285088
zma-u.5
for
118473163
zma-u.5
for
sm1
osa-u.5
for
4332425
ath-u.5
for
RHM3
ath-u.5
for
MUM4
ath-u.5
for
RHM1
gma-u.5
for
100789909
gma-u.5
for
100810341
gma-u.5
for
100775641
sly-u.5
for
101257808
sly-u.5
for
101249663
sly-u.5
for
101248505
vvi-u.5
for
100260586
ppo-u.5
for
18095411
ppo-u.5
for
7470917
mtr-u.5
for
25479851
mtr-u.5
for
25487192


Ortholog ID: 1269
Species zma zma sbi sbi osa tae tae hvu hvu bdi bdi ath ath gma gma sly sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot cit cit nta cre
Symbol LOC103634467 LOC109939248 LOC8084911 LOC8084919 LOC4332425 LOC123097882 LOC123110178 LOC123452966 LOC123449002 LOC100838476 LOC100829812 MUM4 RHM1 LOC100776241 LOC100810341 LOC101257808 LOC101249663 LOC103868430 LOC103832335 LOC100260586 LOC18095411 LOC7470917 LOC25487192 LOC107928086 LOC121223447 LOC106354693 LOC106451477 LOC102589223 LOC102619504 LOC102622881 LOC107810647 CHLRE_02g083800v5
Function* trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 NAD-dependent epimerase/dehydratase family protein rhamnose biosynthesis 1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00541 Biosynthesis of various nucleotide sugars 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00541 Biosynthesis of various nucleotide sugars 3
zma01250 Biosynthesis of nucleotide sugars 3
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01250 Biosynthesis of nucleotide sugars 3
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi00564 Glycerophospholipid metabolism 2
sbi00565 Ether lipid metabolism 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01250 Biosynthesis of nucleotide sugars 3
sbi01230 Biosynthesis of amino acids 2
sbi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01250 Biosynthesis of nucleotide sugars 5
osa00520 Amino sugar and nucleotide sugar metabolism 5
osa01240 Biosynthesis of cofactors 4
osa00541 Biosynthesis of various nucleotide sugars 3
osa00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00541 Biosynthesis of various nucleotide sugars 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00541 Biosynthesis of various nucleotide sugars 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00061 Fatty acid biosynthesis 2
bdi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 5
ath00940 Phenylpropanoid biosynthesis 2
ath00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 3
gma00941 Flavonoid biosynthesis 3
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 5
sly00670 One carbon pool by folate 4
sly01230 Biosynthesis of amino acids 4
sly00270 Cysteine and methionine metabolism 3
sly00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00541 Biosynthesis of various nucleotide sugars 3
bra01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 7
ppo00541 Biosynthesis of various nucleotide sugars 6
ppo00520 Amino sugar and nucleotide sugar metabolism 3
ppo00040 Pentose and glucuronate interconversions 2
ppo00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00541 Biosynthesis of various nucleotide sugars 8
ppo01250 Biosynthesis of nucleotide sugars 8
ppo01240 Biosynthesis of cofactors 4
ppo00040 Pentose and glucuronate interconversions 3
ppo00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00330 Arginine and proline metabolism 5
mtr00360 Phenylalanine metabolism 5
mtr00380 Tryptophan metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00541 Biosynthesis of various nucleotide sugars 9
ghi01250 Biosynthesis of nucleotide sugars 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00541 Biosynthesis of various nucleotide sugars 9
ghi01250 Biosynthesis of nucleotide sugars 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00541 Biosynthesis of various nucleotide sugars 9
bna01250 Biosynthesis of nucleotide sugars 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00541 Biosynthesis of various nucleotide sugars 5
bna01250 Biosynthesis of nucleotide sugars 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 4
sot00100 Steroid biosynthesis 3
sot00280 Valine, leucine and isoleucine degradation 2
sot00650 Butanoate metabolism 2
sot00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01250 Biosynthesis of nucleotide sugars 3
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01250 Biosynthesis of nucleotide sugars 5
nta00541 Biosynthesis of various nucleotide sugars 3
nta02010 ABC transporters 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01250 Biosynthesis of nucleotide sugars 5
cre00520 Amino sugar and nucleotide sugar metabolism 3
cre01240 Biosynthesis of cofactors 2
cre00523 Polyketide sugar unit biosynthesis 2
cre00541 Biosynthesis of various nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103634467 109939248 8084911 8084919 4332425 123097882 123110178 123452966 123449002 100838476 100829812 841785 844193 100776241 100810341 101257808 101249663 103868430 103832335 100260586 18095411 7470917 25487192 107928086 121223447 106354693 106451477 102589223 102619504 102622881 107810647 5727349
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