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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110432829   tRNA wybutosine-synthesizing protein 2/3/4 
 zma-u.5   103633227   tRNA wybutosine-synthesizing protein 2/3/4 
 osa-u.5   4343372   tRNA wybutosine-synthesizing protein 2/3/4-like 
 ath-u.5   AT4G04670   Met-10+ like family protein / kelch repeat-containing protein 
 gma-u.5   100816336   tRNA wybutosine-synthesizing protein 2/3/4 
 sly-u.5   101263515   tRNA wybutosine-synthesizing protein 2/3/4 
 vvi-u.5   100257307   tRNA wybutosine-synthesizing protein 2/3/4 
 ppo-u.5   7458525   tRNA wybutosine-synthesizing protein 2/3/4 
 mtr-u.5   11443137   tRNA wybutosine-synthesizing protein 2/3/4 

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Top 50 coexpressed genes to 110432829 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 110432829 (sbi-r.1 coexpression data)

CoexMap"110432829"


sbiLOC110432829 | Entrez gene ID : 110432829    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (24 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0008175 [list] [network] tRNA methyltransferase activity  (12 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_021309400.1 [sequence] [blastp]
XP_021309401.1 [sequence] [blastp]
XP_021309402.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  mito 1,  cyto_plas 1  (predict for XP_021309400.1)
nucl 4,  cyto 2,  cysk_nucl 2,  chlo 1,  mito 1,  chlo_mito 1,  cyto_plas 1  (predict for XP_021309401.1)
nucl 4,  mito 1,  nucl_plas 1,  chlo 1,  cyto 1,  cysk 1,  cyto_mito 1  (predict for XP_021309402.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_021309400.1)
other 3,  mito 3  (predict for XP_021309401.1)
other 3,  mito 3  (predict for XP_021309402.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110432829

.
zma-u.5
for
103633227

.
osa-u.5
for
4343372

.
ath-u.5
for
AT4G04670

.
gma-u.5
for
100816336

.
sly-u.5
for
101263515

.
vvi-u.5
for
100257307

.
ppo-u.5
for
7458525

.
mtr-u.5
for
11443137

.


Ortholog ID: 10842
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G04670 LOC100816336 LOC101263515 LOC4343372 LOC103633227 LOC103858670 LOC100257307 LOC7458525 LOC11443137 LOC123052552 LOC123044687 LOC123425903 LOC107905930 LOC107958270 LOC106438749 LOC106381444 CHLRE_14g626634v5 LOC110432829 LOC102599033 LOC102630801 LOC100836909 LOC107819037 LOC107811207
Function* Met-10+ like family protein / kelch repeat-containing protein tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4-like tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4-like uncharacterized protein tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4 tRNA wybutosine-synthesizing protein 2/3/4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03040 Spliceosome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo00240 Pyrimidine metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03018 RNA degradation 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825800 100816336 101263515 4343372 103633227 103858670 100257307 7458525 11443137 123052552 123044687 123425903 107905930 107958270 106438749 106381444 5718286 110432829 102599033 102630801 100836909 107819037 107811207
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